SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene32819

Length: 222 nt

UniGene Fasta

>uagpf_v2_unigene32819
CGTCGTGACCTTGGCTGTCACTCATCTTCTGTGCATGAACTTCAAGTAGCATACACTGACATTGGACAGGATCTATTGAAACTTCTGTATTTTGTTGAGATAAATGCAACTGGATTGCGGAAGATACTGAAAAAGTTTGACAAGCGTGTTGGATACCGGTTCACAAACTACTATGTTACAACTCGTTCAAATCATCCTTATTCTCAGCTTCAGCAGGTCTTC

Ace file of the UniGene uagpf_v2_unigene32819

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene20952	1/2
SustainPine v2.0	sp_v2.0_unigene39452	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=SPX domain-containing membrane protein Os02g45520 sp\|A2X8A7.2\|SPXM1_ORYSI RecName: Full=SPX domain-containing membrane protein OsI_08463 dbj\|BAD29241.1\| SPX (SYG1/Pho81/XPR1) domain-containing protein-like [Oryza sativa Japonica Group] dbj\|B	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	protein	-	-	78%

Source	InterPros	Term	Type	Identity
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	SPX, N-terminal	IPR004331	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Major facilitator superfamily	IPR011701	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLM8

Fln msg: Distance to subject end: 543 aas, your sequence is shorter than subject: 74 - 702

Fln protein: RRDLGCHSSSVHELQVAYTDIGQDLLKLLYFVEINATGLRKILKKFDKRVGYRFTNYYVTTRSNHPYSQLQQVF

Protein Length: 75

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTTCTGTGCATGAACTTCAAGTAGCATACACTGACATTGGACAGGATCTATTGAAACTTCTGTATTTTGTTGAGATAAATGCAACTGGATTGCGGAAGATACTGAAAAAGTTTGACAAGCGTGTTGGATACCGGTTCACAAACTACTATGTTACAACTCGTTCAAATCATCCTTATTCTCAGCTTCAGCAGGTCTTC

Fln Alignment:

uagpf_mira_c19883___SSVHELQVAYTDIGQDLLKLLYFVEINATGLRKILKKFDKRVGYRFTNYYVTTRSNHPYSQLQQVF
B8LLM8________________AEVHALREAYRDLGQDLLKLLNFVEMNAIGVRKILKKFDKRFGYRFTDYYVTTRSNHPYSQLQQVF

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain