SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene32803

Length: 228 nt

UniGene Fasta

>uagpf_v2_unigene32803
CGTCGTGACCTTGGCTGTCACTCTGATCTTGGCTGTGGTTTGAGGAGTCAACTTGAACAGCAAAAGAATGTTGTTGATAAACTCGTCTCAAACACACGGTTATTGGAGAGCAAAATACAGGAAGCCAAGTCAAAGAAAGACACATTGAAAGCTCGGGCACAGTCTGCAAAGACTGCACAGAAAGTGAATGAGGTGTTGGGCACCGTTAACACAAGTAGTGCCCTTGCT

Ace file of the UniGene uagpf_v2_unigene32803

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5313	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	plastid transcriptionally active 4 [Arabidopsis thaliana] sp\|O80796.1\|IM30_ARATH RecName: Full=Probable membrane-associated 30 kDa protein, chloroplastic; Flags: Precursor gb\|AAC27135.1\| Similar to chloroplast membrane-associated 30KD protein precursor (I	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	protein	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	vesicle organization	GO:0016050	Biological Process	84%
Blast2go	thylakoid membrane organization	GO:0010027	Biological Process	84%
Blast2go	plastid chromosome	GO:0009508	Cellular Component	84%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	84%
Blast2go	chloroplast inner membrane	GO:0009706	Cellular Component	84%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	84%

Source	InterPros	Term	Type	e value	Identity
Sma3	PspA/IM30	IPR007157	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NX08

Fln msg: Distance to subject end: 94 aas, your sequence is shorter than subject: 76 - 357

Fln protein: RRDLGCHSDLGCGLRSQLEQQKNVVDKLVSNTRLLESKIQEAKSKKDTLKARAQSAKTAQKVNEVLGTVNTSSALA

Protein Length: 77

Fln nts: CGTCGTGACCTTGGCTGTCACTCTGATCTTGGCTGTGGTTTGAGGAGTCAACTTGAACAGCAAAAGAATGTTGTTGATAAACTCGTCTCAAACACACGGTTATTGGAGAGCAAAATACAGGAAGCCAAGTCAAAGAAAGACACATTGAAAGCTCGGGCACAGTCTGCAAAGACTGCACAGAAAGTGAATGAGGTGTTGGGCACCGTTAACACAAGTAGTGCCCTTGCT

Fln Alignment:

uagpf_mira_c19865___GLRSQLEQQKNVVDKLVSNTRLLESKIQEAKSKKDTLKARAQSAKTAQKVNEVLGTVNTSSALA
A9NX08________________GMKSQLEQQKNVVDKLVSNTRLLESKIQEAKSKKDTLKARAQSAKTAQKVNEVLGTVNTSSALA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain