SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene32790

Length: 467 nt

UniGene Fasta

>uagpf_v2_unigene32790
CGTCGTGACCTTGGCTGTCACTCATGTTTAGCTTCGGTGCTCTCGCCCTTGAGGTAACCTGCGGAAGGCCTCCCACATTTCGCACCCCAGAATCGTTTGATCTCATCGGCTGGGTTTGGAAATTGTACGGAGAGAACAGGGTCTTGGAAGCCGCCGACACTGGCCTGACCAAGTTTGGAGGCATCAGCGTTAACGCGGAGGACATCAGACGTTTGCTGTTGTTGGGACTGGCGTGTTCCAACCCGAATCCGGAGGACCGTCCTAGCATGAGGGAGGTTACCCAGATACTGGCTCGGACCATGCCTCCACCCGACGTGCCTCGCGTCAGGCCGGCGTTCGTCTGGTCCCATATGGCTTTCGATGTCAGTTTCGCAACAGGAAGTAGCAGTGGGAGTGTACCGACCTCCCTGAATGCTCTTTTGCCGCCGTCTGATCTAATTGAAAATGAAATAGGGAGGTGATTTGCA

Ace file of the UniGene uagpf_v2_unigene32790

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene33631	1/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%
Blast2go	lectin-like protein kinase	-	-	5.41492e-24	60%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVC0

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 153 - 636

Fln protein: S*PWLSLMFSFGALALEVTCGRPPTFRTPESFDLIGWVWKLYGENRVLEAADTGLTKFGGISVNAEDIRRLLLLGLACSNPNPEDRPSMREVTQILARTMPPPDVPRVRPAFVWSHMAFDVSFATGSSSGSVPTSLNALLPPSDLIENEIGR*

Protein Length: 154

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTTTAGCTTCGGTGCTCTCGCCCTTGAGGTAACCTGCGGAAGGCCTCCCACATTTCGCACCCCAGAATCGTTTGATCTCATCGGCTGGGTTTGGAAATTGTACGGAGAGAACAGGGTCTTGGAAGCCGCCGACACTGGCCTGACCAAGTTTGGAGGCATCAGCGTTAACGCGGAGGACATCAGACGTTTGCTGTTGTTGGGACTGGCGTGTTCCAACCCGAATCCGGAGGACCGTCCTAGCATGAGGGAGGTTACCCAGATACTGGCTCGGACCATGCCTCCACCCGACGTGCCTCGCGTCAGGCCGGCGTTCGTCTGGTCCCATATGGCTTTCGATGTCAGTTTCGCAACAGGAAGTAGCAGTGGGAGTGTACCGACCTCCCTGAATGCTCTTTTGCCGCCGTCTGATCTAATTGAAAATGAAATAGGGAGGTGA___TTTGCA

Fln Alignment:

uagpf_mira_c19852___MFSFGALALEVTCGRPP--TFRTPESFDLIGWVWKLYGENRVLEAADTGLTKFGGISVNAEDIRRLLLLGLACSNPNPEDRPSMREVTQILARTMPPP
A9NVC0________________VFSFGVLLLEVACGRNPVDSLEDSERMILAEWAWELYTEGRLLEASDPKLAGKGGYDVG--EMEKVLKLGLLCSHPEPESRLGMRHVCQILDGEAPIP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain