SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene32700

Length: 237 nt

UniGene Fasta

>uagpf_v2_unigene32700
TTCTACTAAACATGACAATGGAAATCAGAATAGTAGATTTGGAGAAAATATCTCAGACAAAGATAAGAAGAAAATGCTGCATCATGATGACTATGGGTCCTTCTTTGGACCTTCCCAGCCAGCTATTGCTAGGAGAGTTATTGTAGAAACACGTGCAAGGCTCGAGGTAGCACATGTTGCAGCAAAAGTCTCAAGGGATGCTCCAGAAACTAAGAAGATATATGTGCCTGCATCAAA

Ace file of the UniGene uagpf_v2_unigene32700

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8283	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MIP-T3 domain containing protein	-	-	7.0e-05	15%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%
Blast2go	spt2 chromatin protein	-	-	0.0	49%

Source	InterPros	Term	Type	e value	Identity
Sma3	Chromatin SPT2	IPR013256	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKW7

Fln msg: Distance to subject end: 359 aas, your sequence is shorter than subject: 78 - 513

Fln protein: STKHDNGNQNSRFGENISDKDKKKMLHHDDYGSFFGPSQPAIARRVIVETRARLEVAHVAAKVSRDAPETKKIYVPAS

Protein Length: 79

Fln nts: TTCTACTAAACATGACAATGGAAATCAGAATAGTAGATTTGGAGAAAATATCTCAGACAAAGATAAGAAGAAAATGCTGCATCATGATGACTATGGGTCCTTCTTTGGACCTTCCCAGCCAGCTATTGCTAGGAGAGTTATTGTAGAAACACGTGCAAGGCTCGAGGTAGCACATGTTGCAGCAAAAGTCTCAAGGGATGCTCCAGAAACTAAGAAGATATATGTGCCTGCATCAAA

Fln Alignment:

uagpf_mira_c19745___YGSFFGPSQPAIARRVIVETRARLEVAHVAAKVSRDAPETKKIYVPAS
B8LKW7________________YGSFFGPSEIVVARRVIVETRARNEASCIAPKVSKEDP--KRVSEPES

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain