SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene32674

Length: 339 nt

UniGene Fasta

>uagpf_v2_unigene32674
CGTCGTGACCTTGGCTGTCACTCAGTTTGTTCTAGATGTAGTAGAAGGGTCTGTAGAGTGTGCAGAGCAGGAAAGGGTAGTGTTTTGCTACGTGATGCAGTGAATCTTGGTGCAGGTCAGGGTGGATCTAGTCATGGAGGTTCTGCTTACCGTTTGTCAGCTGCAGATAAAGTCCTTTGCAAAAGATGTTGTCCACAAAAGGTTCTTGATGCTCTTCTTCTGGACCGTGTCAAAGTTCTCAGTTCTTTGCGTCACATATCCCGTGTGAAGTGTGCAGCTTTAAAAGCTTTAGAGCAGTTGGTAGGATGTAGCTCAAAAGATTCTGGTATGGACCTTGGT

Ace file of the UniGene uagpf_v2_unigene32674

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene97	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	SAC domain-containing protein 9 [Arabidopsis thaliana] gb\|AAP49842.1\| SAC domain protein 9 [Arabidopsis thaliana] gb\|AEE79965.1\| SAC domain-containing protein 9 [Arabidopsis thaliana]	-	-	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	sac domain-containing protein 9	-	-	61%

Source	GOs	Term	Type	e value	Identity
Blast2go	phosphatidylinositol metabolic process	GO:0046488	Biological Process	0.0	61%
Blast2go	response to osmotic stress	GO:0006970	Biological Process	0.0	61%

Source	InterPros	Term	Type	Identity
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Synaptojanin, N-terminal	IPR002013	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A916

Fln msg: Distance to subject end: 195 aas, your sequence is shorter than subject: 113 - 538

Fln protein: RRDLGCHSVCSRCSRRVCRVCRAGKGSVLLRDAVNLGAGQGGSSHGGSAYRLSAADKVLCKRCCPQKVLDALLLDRVKVLSSLRHISRVKCAALKALEQLVGCSSKDSGMDLG

Protein Length: 114

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTGTTCTAGATGTAGTAGAAGGGTCTGTAGAGTGTGCAGAGCAGGAAAGGGTAGTGTTTTGCTACGTGATGCAGTGAATCTTGGTGCAGGTCAGGGTGGATCTAGTCATGGAGGTTCTGCTTACCGTTTGTCAGCTGCAGATAAAGTCCTTTGCAAAAGATGTTGTCCACAAAAGGTTCTTGATGCTCTTCTTCTGGACCGTGTCAAAGTTCTCAGTTCTTTGCGTCACATATCCCGTGTGAAGTGTGCAGCTTTAAAAGCTTTAGAGCAGTTGGTAGGATGTAGCTCAAAAGATTCTGGTATGGACCTTGGT

Fln Alignment:

uagpf_mira_c19715___AGKGSVLLRDAVN--LXXXXXXXXXXXXXYRLSAADKVLCKRCCPQKVLDALLLDRVKVLSSLRHISRVKCAALKALEQLVGCSSKDSGMDLG
D5A916________________AGKGSVLLRDAVSPGAISGQGGSSHGGSAYCLSAADKVLCKRCCPQKVLDALLLDRVKVLSSLRQISRVKCAALKALQQLVGCSLRDSGMDLG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain