SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene32593

Length: 542 nt

UniGene Fasta

>uagpf_v2_unigene32593
CGTCGTGACCTTGGCTGTCACTCAGCTCCATTTGGACTTCCCACAAGAACAAGGTTGGAACCTACAGGGAAGCCAAATTGCTGGAACGTCGTGACCTTGGCTGTCACTCAAAAGTACAGGGATTTGACTGCTGATGCACGACTTGCTTTCACAGTTTGGGATGTTTCTTCTTCTAAGCAGGACGTGGTCATTGGTGGTGCTACATTCTGTCTTTTCAACAGCAAGAAACAACTTAAAACAGGACAGCAGAAACTTAGGCTTTGGCCGGGGAGAAAAGCAGATGGGTCAGTGCCTACTACTACACCAGGAAAGGTACCTAAGTCAGAACGAGGAGAAATTGAGCGCTTGGAGAAGCTAGTCAACAAGTATGAACGTGGGCAGATTCCGCGTATTGAGTGGCTAGATGAACTTGCATTCAGAGCCATTGAGAAACATCAAGGAGAGAGAAAGTAGATCCATTGGGACATCTCATTTACATCTTATTGTTCATCTAGTTGCTTTTGAGCACCGAGTTGCTTTCCAGGATCTGGGAGCAAATTATC

Ace file of the UniGene uagpf_v2_unigene32593

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3144	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	Phosphoinositide 3-kinase n=1 Tax=Nicotiana tabacum RepID=Q4QXM0_TOBAC	-	-	75%
FL-Next	sp=Phosphatidylinositol 3-kinase, root isoform; Glycine max (Soybean) (Glycine hispida).	-	-	66%
Blast2go	phosphatidylinositol 3-kinase	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphatidylinositol 3-kinase.	EC:2.7.1.137	-	0.0	86%

Source	KEGGs	Term	Identity
Blast2go	Inositol phosphate metabolism	00562	86%
Blast2go	Metabolic pathways	01100	86%
Blast2go	Phosphatidylinositol signaling system	04070	86%

Source	GOs	Term	Type	Identity
Blast2go	response to salt stress	GO:0009651	Biological Process	86%
Blast2go	phosphatidylinositol-mediated signaling	GO:0048015	Biological Process	86%
Blast2go	phosphatidylinositol phosphorylation	GO:0046854	Biological Process	86%
Blast2go	endocytosis	GO:0006897	Biological Process	86%
Blast2go	microgametogenesis	GO:0055046	Biological Process	86%
Blast2go	1-phosphatidylinositol-3-kinase activity	GO:0016303	Molecular Function	86%
Blast2go	ATP binding	GO:0005524	Molecular Function	86%
Blast2go	phosphatidylinositol 3-kinase complex	GO:0005942	Cellular Component	86%
Blast2go	reactive oxygen species metabolic process	GO:0072593	Biological Process	86%

Source	InterPros	Term	Type	Identity
Sma3	Phosphatidylinositol 3-/4-kinase, catalytic domain	IPR000403	-	-
Sma3	Phosphatidylinositol 3/4-kinase, conserved site	IPR018936	-	-
Sma3	Phosphoinositide 3-kinase, C2	IPR002420	-	-
Sma3	Phosphatidylinositol 3-kinase, Vps34 type	IPR008290	-	-
Sma3	Phosphoinositide 3-kinase, accessory (PIK) domain	IPR001263	-	-
Sma3	Phosphatidylinositol Kinase	IPR015433	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P42347

Fln msg: Overlapping hits, possible frame ERROR between 432 and 425, Distance to subject end: 583 aas, your sequence is shorter than subject: 181 - 814

Fln protein: RRDLGCHSAPFGLPTRTRLEPTGKPNCWNVVTLAVTQKYRDLTADARLAFTVWDVSSSKQDVVIGGATFCLFNSKKQLKTGQQKLRLWPGRKADGSVPTTTPGKVPKSERGEIERLEKLVNKYERGQIPRIEWLDELAFRAxxxxIKERESRSIGTSHLHLIVHLVAFEHRVAFQDLGANY

Protein Length: 182

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCTCCATTTGGACTTCCCACAAGAACAAGGTTGGAACCTACAGGGAAGCCAAATTGCTGGAACGTCGTGACCTTGGCTGTCACTCAAAAGTACAGGGATTTGACTGCTGATGCACGACTTGCTTTCACAGTTTGGGATGTTTCTTCTTCTAAGCAGGACGTGGTCATTGGTGGTGCTACATTCTGTCTTTTCAACAGCAAGAAACAACTTAAAACAGGACAGCAGAAACTTAGGCTTTGGCCGGGGAGAAAAGCAGATGGGTCAGTGCCTACTACTACACCAGGAAAGGTACCTAAGTCAGAACGAGGAGAAATTGAGCGCTTGGAGAAGCTAGTCAACAAGTATGAACGTGGGCAGATTCCGCGTATTGAGTGGCTAGATGAACTTGCATTCAGAGCCxxxxxxxxxxxxATCAAGGAGAGAGAAAGTAGATCCATTGGGACATCTCATTTACATCTTATTGTTCATCTAGTTGCTTTTGAGCACCGAGTTGCTTTCCAGGATCTGGGAGCAAATTATC

Fln Alignment:

uagpf_mira_c19623___APFGLPTRTRLEPTGKPNCWNVVTLAVTQKYRDLTADARLAFTVWDVSSSKQDVVIGGATFCLFNSKKQLKTGQQKLRLWPGRKADGSVPTTTPGKVPKSERGEIERLEKLVNKYERGQIPRIEWLDELAFRAxxxIKERESRSIGTSHLHLIVHLVAFEHRVAFQDLGANY
P42347________________APFGLPTRTRLESSGPSYCWNEL-ITLTTKYRDLTAQSQLTFTVWDLSHGEG--LIGGATILLFNNKKQLKTGKQKLRLWAGKEADGTFPTSTPGKVPRHERGELERLEKLVNKYERGQIQRVDWLDRLTFKTxxxIKERESLKNGSSHLYLVVDFCSFEHRVVFQESGANF

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
275	66	33			0.997476
410	33	66			0.997453
415	66			33	0.997464
434	25	50			0.995533
440	50		50		1.0
499		33	66		0.997453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain