SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene32586

Length: 259 nt

UniGene Fasta

>uagpf_v2_unigene32586
GACGTCATACATGACCCGGCTGTGTTGTTTCTAGATGAACCCACTTCTGGTCTGGACAGTGCAGCAGCTCTGCATGTAGTAGAGATGCTACATGCAATGGCCAAAAAAACCCCAGAGCCGAACGGTTATCTTAACAATTCATCAACCCAGCTACAGGATTCTGAATCTGATAAGCTCTTTATTGATCCTTACGAAGGGCTCAGTAGCATACCATGGGTCTTTGAAGTCACTGCATGAGTCACTTGAAATCTGCAGGCAG

Ace file of the UniGene uagpf_v2_unigene32586

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene37110	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-binding cassette transporter, subfamily G, member 14, group WBC protein PpABCG14 n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SSA0_PHYPA	-	-	1.00053e-42	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Blast2go	white-brown-complex abc transporter family	-	-	2.2715e-42	79%

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Cytosolic fatty-acid binding	IPR000463	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Pigment precursor permease	IPR005284	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Leucine-rich repeat 3	IPR011713	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	Peptidase C14, ICE, catalytic subunit p20, active site	IPR016129	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LNF9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 367 aas, your sequence is shorter than subject: 79 - 819

Fln protein: DVIHDPAVLFLDEPTSGLDSAAALHVVEMLHAMAKKTPEPNGYLNNSSTQLQDSESDKLFIDPYEGLSSIPWVFEVTA*

Protein Length: 80

Fln nts: GACGTCATACATGACCCGGCTGTGTTGTTTCTAGATGAACCCACTTCTGGTCTGGACAGTGCAGCAGCTCTGCATGTAGTAGAGATGCTACATGCAATGGCCAAAAAAACCCCAGAGCCGAACGGTTATCTTAACAATTCATCAACCCAGCTACAGGATTCTGAATCTGATAAGCTCTTTATTGATCCTTACGAAGGGCTCAGTAGCATACCATGGGTCTTTGAAGTCACTGCATGAGTCACTTGAAATCTGCAGGCAG

Fln Alignment:

uagpf_mira_c19615___DVIHDPAVLFLDEPTSGLDSAAALHVVEMLHAMAK
B8LNF9________________EILIDPSLLFLDEPTSGLDSTTALRIVQMLHDIAR

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain