SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene32530

Length: 410 nt

UniGene Fasta

>uagpf_v2_unigene32530
CGTCGTGACCTTGGCTGTCACTCAGGTTTACTTTATGGCTATGATATTGGTGCTACATCTGGTGCTGATATTTCGATAGAGTCAGCTGAACTTAGCGGAACAGATTGGTACAATTTGTCATCTATAGCAAATGGTGTTGTGGTTAGTGGATCCCTTTTTGGGGCTCTAATTGGGTCTATTATCGCTTTCAATGTCGCAGATATCTTAGGTAGACGGAGGGAATTAATTGTTGCATCTCTGTTATATGCAATCGGAGCTTTAATTTCAGCGTTGGCACTTGATCTTGCTATGTTAATAATTGGTCGGCTGATATATGGCTTTGGTATTGGCTTGGCTATGCATGCAGCTCCATTGTACATTGCAGAGACATCTCCACCTCAGATTCGAGGGAGCGCTTCGCAGTGAGTGAC

Ace file of the UniGene uagpf_v2_unigene32530

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14769	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	putative sugar transporter [Nicotiana langsdorffii x Nicotiana sanderae]	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	75%
Blast2go	vacuolar glucose transporter	-	-	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	transporter activity	GO:0005215	Molecular Function	0.0	80%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	0.0	80%

Source	InterPros	Term	Type	Identity
Sma3	Lipocalin	IPR002345	-	-
Sma3	Sugar/inositol transporter	IPR003663	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWB2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 321 aas, your sequence is shorter than subject: 135 - 521

Fln protein: RRDLGCHSGLLYGYDIGATSGADISIESAELSGTDWYNLSSIANGVVVSGSLFGALIGSIIAFNVADILGRRRELIVASLLYAIGALISALALDLAMLIIGRLIYGFGIGLAMHAAPLYIAETSPPQIRGSASQ*

Protein Length: 136

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTTTACTTTATGGCTATGATATTGGTGCTACATCTGGTGCTGATATTTCGATAGAGTCAGCTGAACTTAGCGGAACAGATTGGTACAATTTGTCATCTATAGCAAATGGTGTTGTGGTTAGTGGATCCCTTTTTGGGGCTCTAATTGGGTCTATTATCGCTTTCAATGTCGCAGATATCTTAGGTAGACGGAGGGAATTAATTGTTGCATCTCTGTTATATGCAATCGGAGCTTTAATTTCAGCGTTGGCACTTGATCTTGCTATGTTAATAATTGGTCGGCTGATATATGGCTTTGGTATTGGCTTGGCTATGCATGCAGCTCCATTGTACATTGCAGAGACATCTCCACCTCAGATTCGAGGGAGCGCTTCGCAGTGAGTGAC

Fln Alignment:

uagpf_mira_c19550___GLLYGYDIGATSGADISIESAELSGTDWYNLSSIANGVVVSGSLFGALIGSIIAFNVADILGRRRELIVASLLYAIGALISALALDLAMLIIGRLIYGFGIGLAMHAAPLYIAETSPPQIRGS
A9NWB2________________GVLFGYDIGATSGASVSLQSAELSGTTWYNLSSIQTGLVVSGSLYGALCGSLIAFNVSDFLGRRRELIVAAALYLSGALITALAPGLPVLIVGRLLFGFGIGLAMHAAPLYISETSPSQIRGT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain