SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene32492

Length: 282 nt

UniGene Fasta

>uagpf_v2_unigene32492
CGTCGTGACCTTGGCTGTCACTCATTGGTTACCCGTTGTGTCCTTGGCTGTCATTTCTTTTGGGTTCCATAGATAAGGATTCCTTTATCAGGTTTGCTGTTTGGACTGCCATAATACTCCTGTATTACATCTTTTTTGGGCTGCATGCATCATATGACACTGCCAAAGCTGCTGACGCCGAGAGAGAGGGGAAGGCTGATAATTTGGGTTGAGTCTCTGCATGGAAGGAGGCAATGCAGCCCTGCAATGTTACAATGGGACCTATGATAGGTTGTCAGTAGA

Ace file of the UniGene uagpf_v2_unigene32492

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene40323	1/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cationic amino acid transporter, putative n=1 Tax=Ricinus communis RepID=B9SKU5_RICCO	-	-	2.0e-08	51%
FL-Next	tr=Cationic amino acid transporter, putative; Ricinus communis (Castor bean).	-	-	0.0	61%
Blast2go	amino acid transport protein AAT1	-	-	3.16918e-08	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	L-arginine import	GO:0043091	Biological Process	3.16918e-08	64%
Blast2go	lysine transport	GO:0015819	Biological Process	3.16918e-08	64%
Blast2go	L-glutamate import	GO:0051938	Biological Process	3.16918e-08	64%
Blast2go	cationic amino acid transmembrane transporter activity	GO:0015326	Molecular Function	3.16918e-08	64%
Blast2go	L-lysine transmembrane transporter activity	GO:0015189	Molecular Function	3.16918e-08	64%
Blast2go	arginine transmembrane transporter activity	GO:0015181	Molecular Function	3.16918e-08	64%
Blast2go	L-glutamate transmembrane transporter activity	GO:0005313	Molecular Function	3.16918e-08	64%
Blast2go	plasma membrane	GO:0005886	Cellular Component	3.16918e-08	64%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9SKU5

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 70 - 587

Fln protein: S*PWLSLIGYPLCPWLSFLLGSIDKDSFIRFAVWTAIILLYYIFFGLHASYDTAKAADAEREGKADNLG*

Protein Length: 71

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTGGTTACCCGTTGTGTCCTTGGCTGTCATTTCTTTTGGGTTCCATAGATAAGGATTCCTTTATCAGGTTTGCTGTTTGGACTGCCATAATACTCCTGTATTACATCTTTTTTGGGCTGCATGCATCATATGACACTGCCAAAGCTGCTGACGCCGAGAGAGAGGGGAAGGCTGATAATTTGGGTTGA___GTCTCTGCATGGAAGGAGGCAATGCAGCCCTGCAATGTTACAATGGGACCTATGATAGGTTGTCAGTAGA

Fln Alignment:

uagpf_mira_c19504___LIGYPLCPWLS--------FLLGSIDKDSFIRFAVWTAIILLYYIFFGLHASYDTAKAADAER
B9SKU5________________LWGVPLVPWLPSASVFINIFLLGSIDRDSFVRFAIWTGILLIYYFLFGLHASYDTAKESEANR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain