SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene32491

Length: 211 nt

UniGene Fasta

>uagpf_v2_unigene32491
TGAATCATGGAATCTCGAATGGTGGAGTGCGTAAACTATAGCCTTCGTCTGTACATGTACAGCAATGCTATTTTTATTGGTGAACGGCTCTGCGCCGAATACCCTTCTGAGAAGAATTCTCAATTATTAGCAAGCTGTTACTTGCGTAACAATCAAGCTTATCGTGCATATAGCATATTAAAAGGGACACAATCTCCACAATCCCGTTATT

Ace file of the UniGene uagpf_v2_unigene32491

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3392	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	cell division cycle protein 27-B [Arabidopsis thaliana] sp\|Q8LGU6.1\|CD27B_ARATH RecName: Full=Cell division cycle protein 27 homolog B; Short=CDC27 homolog B; AltName: Full=Protein HOBBIT emb\|CAD31951.1\| HOBBIT protein [Arabidopsis thaliana] gb\|AEC06953.1	-	-	56%
FL-Next	sp=Cell division cycle protein 27 homolog B; Arabidopsis thaliana (Mouse-ear cress).	-	-	67%
Blast2go	cell division cycle protein 27 homolog b-like	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	gamete generation	GO:0007276	Biological Process	73%
Blast2go	regulation of unidimensional cell growth	GO:0051510	Biological Process	73%
Blast2go	regulation of cell division	GO:0051302	Biological Process	73%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	73%
Blast2go	root cap development	GO:0048829	Biological Process	73%
Blast2go	cell differentiation	GO:0030154	Biological Process	73%
Blast2go	root meristem specification	GO:0010071	Biological Process	73%
Blast2go	regulation of mitotic cell cycle	GO:0007346	Biological Process	73%
Blast2go	protein binding	GO:0005515	Molecular Function	73%
Blast2go	cell plate	GO:0009504	Cellular Component	73%
Blast2go	spindle	GO:0005819	Cellular Component	73%
Blast2go	anaphase-promoting complex	GO:0005680	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Sel1-like	IPR006597	-	-
Sma3	Tetratricopeptide TPR-4	IPR011717	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q8LGU6

Fln msg: Distance to subject end: 676 aas, your sequence is shorter than subject: 68 - 744

Fln protein: MESRMVECVNYSLRLYMYSNAIFIGERLCAEYPSEKNSQLLASCYLRNNQAYRAYSILKGTQSPQSRY

Protein Length: 69

Fln nts: TGAATC_-_ATGGAATCTCGAATGGTGGAGTGCGTAAACTATAGCCTTCGTCTGTACATGTACAGCAATGCTATTTTTATTGGTGAACGGCTCTGCGCCGAATACCCTTCTGAGAAGAATTCTCAATTATTAGCAAGCTGTTACTTGCGTAACAATCAAGCTTATCGTGCATATAGCATATTAAAAGGGACACAATCTCCACAATCCCGTTATT

Fln Alignment:

uagpf_mira_c19503___MESRMVECVNYSLRLYMYSNAIFIGERLCAEYPSEKNSQLLASCYLRNNQAYRAYSILKGTQSPQSRY
Q8LGU6________________MEAMLVDCVNNSLRHFVYKNAIFMCERLCAEFPSEVNLQLLATSYLQNNQAYSAYHLLKGTQMAQSRY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain