SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene32483

Length: 557 nt

UniGene Fasta

>uagpf_v2_unigene32483
CGTCGTGACCTTGGCTGTCACTCAAGTTTCTCGGCAAATGAATGGTTGATTCAGCGTCTAGAGATGTTAAGTGCAACTGTTCTTTGCTCATCTGCTCTTGCTATGGTTCTACTCCCGAAGGACAGCTTCAATCCTGGTTTTGTTGGGATGTCGTTATCTTGTTGTCTGTCATTGAACATATCATTGGTTTTCAGTATTCAAAACCAATGTACACTTGCAAACTACATTGTTTCTGTAGAACGCATCAAACAGTACATGCGCATTCCTAGTGAGGCACCAGCTGTTATGGTAGATTGCCGACCACCAGATAGTTGGCCCTGCATGGGAAGGTGGAATTGCAGGGCTTGAAGATTAGATATAGAGCCAACAGCCCCCTTGTTTTACGGGGCATTACATGTACATTTGAAGGAGGGCAAAAGATTGGCATTGTTGGGCGAACAGGAAGTGGGAAGACCACTCTCATTAGTGCTATTTTTCGATTAGTGGAACCTGCAGGGGGTAGAATCCTTATAGATGGTTTGGATACTACCTCTATTGGGCTTCATGATTTGCGGTCG

Ace file of the UniGene uagpf_v2_unigene32483

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6330	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Multidrug resistance protein ABC transporter family (Fragment) n=2 Tax=Populus trichocarpa RepID=B9N9A1_POPTR	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	34%
Blast2go	multidrug resistance protein abc transporter family	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	2-alkenal reductase.	EC:1.3.1.74	-	0.0	83%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	83%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	83%
Blast2go	ATP catabolic process	GO:0006200	Biological Process	83%
Blast2go	ATPase activity, coupled to transmembrane movement of substances	GO:0042626	Molecular Function	83%
Blast2go	2-alkenal reductase [NAD(P)] activity	GO:0032440	Molecular Function	83%
Blast2go	ATP binding	GO:0005524	Molecular Function	83%
Blast2go	integral to membrane	GO:0016021	Cellular Component	83%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	Neuraxin/MAP1B repeat	IPR000102	-	-
Sma3	Aminotransferase, class V/Cysteine desulfurase	IPR000192	-	-
Sma3	Histidine phosphatase superfamily, clade-2	IPR000560	-	-
Sma3	Serine/threonine dehydratase, pyridoxal-phosphate-binding site	IPR000634	-	-
Sma3	ABC transporter, transmembrane domain	IPR001140	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	Hemopexin/matrixin, conserved site	IPR018486	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABW1

Fln msg: Distance to subject end: 170 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 82 - 316

Fln protein: LALHGKVELQGLKIRYRANSPLVLRGITCTFEGGQKIGIVGRTGSGKTTLISAIFRLVEPAGGRILIDGLDTTSIGLHDLRS

Protein Length: 83

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGTTTCTCGGCAAATGAATGGTTGATTCAGCGTCTAGAGATGTTAAGTGCAACTGTTCTTTGCTCATCTGCTCTTGCTATGGTTCTACTCCCGAAGGACAGCTTCAATCCTGGTTTTGTTGGGATGTCGTTATCTTGTTGTCTGTCATTGAACATATCATTGGTTTTCAGTATTCAAAACCAATGTACACTTGCAAACTACATTGTTTCTGTAGAACGCATCAAACAGTACATGCGCATTCCTAGTGAGGCACCAGCTGTTATGGTAGATTGCCGACCACCAGATAGTTGGCCCTGCATGGGAAGGTGGAATTGCAGGGCTTGAAGATTAGATATAGAGCCAACAGCCCCCTTGTTTTACGGGGCATTACATGTACATTTGAAGGAGGGCAAAAGATTGGCATTGTTGGGCGAACAGGAAGTGGGAAGACCACTCTCATTAGTGCTATTTTTCGATTAGTGGAACCTGCAGGGGGTAGAATCCTTATAGATGGTTTGGATACTACCTCTATTGGGCTTCATGATTTGCGGTCG

Fln Alignment:

uagpf_mira_c19491___LHGKVELQGLKIRYRANSPL-VLRGITCTFEGGQKIGIVGRTGSGKTTLISAIFRLVEPAGGRILIDGLDTTSIGLHDLRS
D5ABW1________________LEGRIEFVNISFNYPARPMIPVLQNVNLSFFPGELVAVVGLSGSGKSTLLALLLRLYEAVSGQILIDGIPLNELDVKWFRS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain