SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene32481

Length: 290 nt

UniGene Fasta

>uagpf_v2_unigene32481
GGTGGTCTTCAGGTTCTAAGTTTTCGTGAGCTTGCTGTCACTCTTTAGTCGAGGGATATGGAGGATGGGCCTTGCGAATGGAAGTTGTACCAATAGAATCTGCATACCCTGGATTTGGTGAACTTGTGGTACTCGATGGTACAGATCATATCAATTCGTGCAAACCTGTTAGCCGTGCAGATCCAGCATATAATGAAGTGCTTCATTTTCTGCAGACATTACAGAGAAAGCTCTAGTTCCATCCAAATAGGGTCTCAAATGTATAGGCATTTTCATCATTTCATTTGTTA

Ace file of the UniGene uagpf_v2_unigene32481

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13037	1/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Alpha/beta-hydrolase family protein-like protein n=8 Tax=Camelineae RepID=F4JKN4_ARATH	-	-	7.0e-24	79%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	0.0	79%
Blast2go	binding protein	-	-	5.07287e-30	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	GPI anchor metabolic process	GO:0006505	Biological Process	5.07287e-30	86%
Blast2go	intracellular protein transport	GO:0006886	Biological Process	5.07287e-30	86%
Blast2go	binding	GO:0005488	Molecular Function	5.07287e-30	86%
Blast2go	hydrolase activity, acting on ester bonds	GO:0016788	Molecular Function	5.07287e-30	86%
Blast2go	intrinsic to endoplasmic reticulum membrane	GO:0031227	Cellular Component	5.07287e-30	86%
Blast2go	mitochondrion	GO:0005739	Cellular Component	5.07287e-30	86%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: D8RS47

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 78 - 1059

Fln protein: WSSGSKFS*ACCHSLVEGYGGWALRMEVVPIESAYPGFGELVVLDGTDHINSCKPVSRADPAYNEVLHFLQTLQRKL*

Protein Length: 79

Fln nts: GGTGGTCTTCAGGTTCTAAGTTTTCGTGAGCTTGCTGTCACTCTTTAGTCGAGGGATATGGAGGATGGGCCTTGCGAATGGAAGTTGTACCAATAGAATCTGCATACCCTGGATTTGGTGAACTTGTGGTACTCGATGGTACAGATCATATCAATTCGTGCAAACCTGTTAGCCGTGCAGATCCAGCATATAATGAAGTGCTTCATTTTCTGCAGACATTACAGAGAAAGCTCTAG___TTCCATCCAAATAGGGTCTCAAATGTATAGGCATTTTCATCATTTCATTTGTTA

Fln Alignment:

uagpf_mira_c19489___LVEGYGGWALRMEVVPIESAYPGFGELVVLDGTDHINSCKPVSRADPAYNEVLHFLQTLQRKL
D8RS47________________LVEGYGGWALRMEVVPIESAYPGFGELVVLDGTDHVNSCKPLSPSDPAYTKTLEFLRRIQVKI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain