SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene32414

Length: 353 nt

UniGene Fasta

>uagpf_v2_unigene32414
CGTCGTGACCTTGGCTGTCACGTAAGATGCGTCTTAAGGAGGGATACATTAAAGAAGGAAGTACGATCAGTGTAATGGGCATAGTTCAACGAAATGATAATGAGCTTATGGTTGTTCCTTGTCTGCACTCATTTCTACCGGATGCGAGTGGAGAAGGTTTCTTCTGCCTGTAAAAATTGAAGGAATTGTTTTGAGATGTGAGGATAATACAGCATAAAATGTTTTACTTGTGTGGATAGATGTCATTTGCTATACAGTTGAAACTTCACTAGCCTGATTTAACACTCCCTAGTTTATCTCCTTCAGTAAGATACAGCTCGTTTAAATGAGGATTGAAATGTTGGACTTTAAGT

Ace file of the UniGene uagpf_v2_unigene32414

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene35856	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ubiquitin-specific protease family C19-related protein [Arabidopsis thaliana] sp\|Q9FZ45.1\|Y1686_ARATH RecName: Full=Uncharacterized membrane protein At1g16860 gb\|AAF99847.1\|AC051629_14 Unknown protein [Arabidopsis thaliana] gb\|AAK92824.1\| unknown protein	-	-	1.0e-27	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Blast2go	uncharacterized membrane protein at1g16860-like	-	-	5.80713e-39	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	0.0	-
Sma3	Pentaxin	IPR001759	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LR84

Fln msg: Unexpected stop codon in the beginning of your sequence, query STOP codon is far from subject stop. Distance to subject end: 21 aas, your sequence is shorter than subject: 57 - 510

Fln protein: S*PWLSRKMRLKEGYIKEGSTISVMGIVQRNDNELMVVPCLHSFLPDASGEGFFCL*

Protein Length: 58

Fln nts: CGTCGTGACCTTGGCTGTCACGTAAGATGCGTCTTAAGGAGGGATACATTAAAGAAGGAAGTACGATCAGTGTAATGGGCATAGTTCAACGAAATGATAATGAGCTTATGGTTGTTCCTTGTCTGCACTCATTTCTACCGGATGCGAGTGGAGAAGGTTTCTTCTGCCTGTAA___AAATTGAAGGAATTGTTTTGAGATGTGAGGATAATACAGCATAAAATGTTTTACTTGTGTGGATAGATGTCATTTGCTATACAGTTGAAACTTCACTAGCCTGATTTAACACTCCCTAGTTTATCTCCTTCAGTAAGATACAGCTCGTTTAAATGAGGATTGAAATGTTGGACTTTAAGT

Fln Alignment:

uagpf_mira_c19413___RKMRLKEGYIKEGSTISVMGIVQRNDNELMVVP
B8LR84________________RVMRLKEGHIKEGSTVTVMGVVQRHENVLMIVP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain