SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene32278

Length: 394 nt

UniGene Fasta

>uagpf_v2_unigene32278
TACAAGCGCGCTGGTATATGAGTACATGGCCAACGGATCTCTGGATAAATTTATATTTGCAGGTAAAGACAAGAGGCAAGTCTTAATGTGGGAACAACTGTATTCAATTGCTTTGGGTGCGGCTCGTGGAATTGCATATTTACATCATGATTGCGAGAAGCGCATCATACACTTCGACATCAAACCTCACAATATATTGCTGGACGCCGATTTCACACCAAAAGTTTCTGATTTTGGGCTGGCAAAACTTTGTGGGAAGGGAGACGACCATATTTCAATGACAGCCTGGAGAGGGACGCCGGGATATGTTGCCCCGGAGTTGTGCCATAGTGATGCCGGTCCTGTTACAGATAAATCAGATGTCTATAGTTTCGGAATGCTGTCGCTGGAGATT

Ace file of the UniGene uagpf_v2_unigene32278

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene43266	2/3
SustainPine v2.0	sp_v2.0_unigene52821	1/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Receptor serine/threonine kinase, putative n=1 Tax=Ricinus communis RepID=B9RIJ3_RICCO	-	-	4.0e-22	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Blast2go	probable receptor-like protein kinase at5g39020-like	-	-	1.99e-36	75%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Thaumatin, pathogenesis-related	IPR001938	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Thaumatin, conserved site	IPR017949	-	-
Sma3	DNA methylase, C-5 cytosine-specific, active site	IPR018117	-	-
Sma3	Ribonuclease T2, active site	IPR018188	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NQB9

Fln msg: Distance to subject end: 137 aas, your sequence is shorter than subject: 131 - 290

Fln protein: TSALVYEYMANGSLDKFIFAGKDKRQVLMWEQLYSIALGAARGIAYLHHDCEKRIIHFDIKPHNILLDADFTPKVSDFGLAKLCGKGDDHISMTAWRGTPGYVAPELCHSDAGPVTDKSDVYSFGMLSLEI

Protein Length: 132

Fln nts: TACAAGCGCGCTGGTATATGAGTACATGGCCAACGGATCTCTGGATAAATTTATATTTGCAGGTAAAGACAAGAGGCAAGTCTTAATGTGGGAACAACTGTATTCAATTGCTTTGGGTGCGGCTCGTGGAATTGCATATTTACATCATGATTGCGAGAAGCGCATCATACACTTCGACATCAAACCTCACAATATATTGCTGGACGCCGATTTCACACCAAAAGTTTCTGATTTTGGGCTGGCAAAACTTTGTGGGAAGGGAGACGACCATATTTCAATGACAGCCTGGAGAGGGACGCCGGGATATGTTGCCCCGGAGTTGTGCCATAGTGATGCCGGTCCTGTTACAGATAAATCAGATGTCTATAGTTTCGGAATGCTGTCGCTGGAGATT

Fln Alignment:

uagpf_mira_c19215___LVYEYMANGSLDKFIFAGKDKRQVLMWEQLYSIALGAARGIAYLHHDCEKRIIHFDIKPHNILLDADFTPKVSDFGLAKLCGKGDDHISMTAWRGTPGYVAPELCHSDAGPVTDKSDVYSFGMLSLEI
A9NQB9________________LVYEYLPNKSLDKLLF-NPERRKVLDWQKRYNIIIGVARGLLYLHQDSQLRIIHRDVKVNNILLDDKLNPKIADFGLARLFPDDETHVH-TRVAGTYGYMAPE--YAMLGQLSVKADVYSFGVVLLEI

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
203			66	33	0.997453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain