SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene32212

Length: 424 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene32212
CGTCGTGACCTTGGCTGTCACTCAAATTTGCAGCAAGATGCTCCATTGCCTAACATCGGAATGTACATGTTGTCCACTTTAGAGAATGCAAAAATCAAGAAGCAGGTACAGGAGCTGCTTGAGAAGGGGTTCATCGGACCTAGCACATCACCATGTGGGTCTCCAATTGTTTTGGTGAGAAAGAAAGATGGCTCATGGAGAATGTGCATTGATTACCGAGCACTGAAAAAGATAATGATAAAAAATCGTTATCCCCTTCCTCACATAGATGATCTATTAGATCAGTTGAAAGAAGCTATTTATTTTCTAAGTTGGACTTGCATAGTGGCTATCATCAGGTCAGAGTTACAGAGCAAGATGCATGGAAGATTGCTTTCAAAACAAAGCAGGGATTGTATGAGTGGTTTGTTATGCCTTTTGGCTT

Ace file of the UniGene uagpf_v2_unigene32212 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene36623	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	OSJNBa0017P10.4 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XQ51_ORYSJ	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	44%
Blast2go	retrotransposon ty3-gypsy subclass	-	-	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular metabolic process	GO:0044237	Biological Process	0.0	84%
Blast2go	binding	GO:0005488	Molecular Function	0.0	84%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Peptidase C48, SUMO/Sentrin/Ubl1	IPR003653	-	-
Sma3	Putative S-adenosyl-L-methionine-dependent methyltransferase	IPR004159	-	-
Sma3	Auxin efflux carrier	IPR004776	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3		IPR013084	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWN2

Fln msg: STOP codon was not found. Distance to subject end: 25 aas, No stop codon before M and low homology subject, your sequence is longer than subject: 121 - 66

Fln protein: MYMLSTLENAKIKKQVQELLEKGFIGPSTSPCGSPIVLVRKKDGSWRMCIDYRALKKIMIKNRYPLPHIDDLLDQLKEAIYFLSWTCIVAIIRSELQSKMHGRLLSKQSRDCMSGLLCLLA

Protein Length: 122

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATTTGCAGCAAGATGCTCCATTGCCTAACATCGGA_-_ATGTACATGTTGTCCACTTTAGAGAATGCAAAAATCAAGAAGCAGGTACAGGAGCTGCTTGAGAAGGGGTTCATCGGACCTAGCACATCACCATGTGGGTCTCCAATTGTTTTGGTGAGAAAGAAAGATGGCTCATGGAGAATGTGCATTGATTACCGAGCACTGAAAAAGATAATGATAAAAAATCGTTATCCCCTTCCTCACATAGATGATCTATTAGATCAGTTGAAAGAAGCTATTTATTTTCTAAGTTGGACTTGCATAGTGGCTATCATCAGGTCAGAGTTACAGAGCAAGATGCATGGAAGATTGCTTTCAAAACAAAGCAGGGATTGTATGAGTGGTTTGTTATGCCTTTTGGCTT

Fln Alignment:

uagpf_mira_c19117___SPIVLVRKKDGSWRMCIDYRALKKIMIKNRYPLPHIDDLLDQLKEAIYFL
A9NWN2________________TPIILVRINDGSYILCNNCRVLNEITIKDKFHISIVDELLDELYGTMYFL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain