SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene32130

Length: 311 nt

UniGene Fasta

>uagpf_v2_unigene32130
CGTCGTGACCTTCGTCGTGACCTTGGCTGTCACTCTGAAGCAAAATTATGATAACCTTATGGAAGAAAATAACAATCTCCAGGCCATGATCGAACGTCTAAGAAATAAATCACAGAGCTACCATGACCAGAAATTTCAGGCAAATTCTTCCAAATTACAAAAGGACGATCAGGACTTGCCCATTCTCATGATGTCTGCAACCAAAGTTGATTGTGCAAACAAGGAGAATAATAATGAAGGGCGTTCTAGCATTGGAAGTGAAGGCAGTTCTGTCTTGGACATGGACAGCCCCAGCACCATTGAGAGCCAAC

Ace file of the UniGene uagpf_v2_unigene32130

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7796	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Homeobox-leucine zipper-like protein n=2 Tax=Picea RepID=Q3HRT1_PICGL	-	-	76%
FL-Next	tr=Homeobox-leucine zipper-like protein; Picea glauca (White spruce) (Pinus glauca).	-	-	86%
Blast2go	hd domain class transcription factor	-	-	74%

Source	GOs	Term	Type	Identity
Blast2go	response to sucrose stimulus	GO:0009744	Biological Process	74%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	74%
Blast2go	leaf morphogenesis	GO:0009965	Biological Process	74%
Blast2go	cotyledon morphogenesis	GO:0048826	Biological Process	74%
Blast2go	transcription regulator activity	GO:0030528	Molecular Function	74%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	74%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	74%
Blast2go	nucleus	GO:0005634	Cellular Component	74%

Source	InterPros	Term	Type	Identity
Sma3	Homeodomain	IPR001356	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3		IPR012287	-	-
Sma3	Helix-turn-helix motif	IPR000047	-	-
Sma3	Leucine zipper, homeobox-associated	IPR003106	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q3HRT1

Fln msg: Distance to subject end: 60 aas, your sequence is shorter than subject: 103 - 309

Fln protein: VVTFVVTLAVTLKQNYDNLMEENNNLQAMIERLRNKSQSYHDQKFQANSSKLQKDDQDLPILMMSATKVDCANKENNNEGRSSIGSEGSSVLDMDSPSTIESQ

Protein Length: 104

Fln nts: CGTCGTGACCTTCGTCGTGACCTTGGCTGTCACTCTGAAGCAAAATTATGATAACCTTATGGAAGAAAATAACAATCTCCAGGCCATGATCGAACGTCTAAGAAATAAATCACAGAGCTACCATGACCAGAAATTTCAGGCAAATTCTTCCAAATTACAAAAGGACGATCAGGACTTGCCCATTCTCATGATGTCTGCAACCAAAGTTGATTGTGCAAACAAGGAGAATAATAATGAAGGGCGTTCTAGCATTGGAAGTGAAGGCAGTTCTGTCTTGGACATGGACAGCCCCAGCACCATTGAGAGCCAAC

Fln Alignment:

uagpf_mira_c18754___KQNYDNLMEENNNLQAMIERLRNKSQSYHDQKFQANSSKLQKDDQDLPILMMSATKVDCANKXXXXXXXXXXXXXXXXVLDMDSPSTIESQ
Q3HRT1________________KQDYDNLMEENNNLQAMIERMSSKSQSCNDQKFQANSSKLQKDDQDLQLLMMSATKVDCADKENNNEGPSSIGSEGSSVLDMDSPGTIDSQ

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
13		66	33		0.997471
15		33		66	0.997471
16		66		33	0.997471
19		33	66		0.997471
31	25			75	0.996473
32		50	25	25	0.995533
33	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain