SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene32064

Length: 672 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene32064

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7152	8/9

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF822 domain containing protein	-	-	5.0e-32	31%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Blast2go	protein	-	-	0.0	68%

Source	ECs	Term	Type	e value	Identity
Blast2go	Beta-amylase.	EC:3.2.1.2	-	0.0	68%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	68%
Blast2go	Metabolic pathways	01100		0.0	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	carbohydrate metabolic process	GO:0005975	Biological Process	0.0	68%
Blast2go	beta-amylase activity	GO:0016161	Molecular Function	0.0	68%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 14B, plant	IPR001371	-	-
Sma3	Glycoside hydrolase, family 14	IPR001554	-	-
Sma3	BZR1, transcriptional repressor	IPR008540	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Glycoside hydrolase, family 14, conserved site	IPR018238	-	-

Full-Lengther Next Prediction

SNPs (tot: 54)

Position	A %	C %	G %	T %	Probability
34		50	50		1.0
35		50		50	1.0
37	50		50		1.0
38		50		50	1.0
39		50	50		1.0
40	50	50			1.0
41		50		50	1.0
45		50	50		1.0
46		50	50		1.0
48			50	50	1.0
50	50			50	1.0
56		50		50	1.0
57	50			50	1.0
176			20	80	0.995498
180			20	80	0.995498
185		20		80	0.9955
189	75		25		0.996473
191		75		25	0.996473
194		25	75		0.996473
196	75	25			0.996473
197	75			25	0.996473
219	25		75		0.996473
236	83	16			0.994517
237			16	83	0.994515
241	83			16	0.994515
243	16			83	0.994515
245		16		83	0.994515
248	80			20	0.995493
255	80		20		0.995493
257		20	80		0.995493
258	20		80		0.995493
259		20	80		0.995493
261		20		80	0.995493
262	20		80		0.995493
313			11	88	0.923646
314			88	11	0.923646
315	88	11			0.923646
317	88			11	0.923646
318	88		11		0.923646
319	11			88	0.923646
320		11	88		0.923646
323			87	12	0.99256
326		12	87		0.99256
327	85			14	0.993533
330		14		85	0.993533
333		14	85		0.993533
335		12	87		0.99256
336	14		85		0.993533
452		83		16	0.994513
453	83			16	0.994514
454	83	16			0.994514
456		16		83	0.994514
566			33	66	0.997453
567		66		33	0.997455

SSRs (tot: 1)

Start position	End position	Sequence	Length
169	183	CTTG CTTG CTTG CTT	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain