SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene32037

Length: 535 nt

UniGene Fasta

>uagpf_v2_unigene32037
CGTCGTGACCTTGGCTGTCACTCATCTAAGAAATAAATCACAGAGCTACCATGACCAGAAATTTCAGGCAAATTCTTCGACCTTGCTGTCGGTCGATCAGGACTTGCCCATTCTCATGATGTCTGCAACCAAAGTTGATTGTCGCAAACAAGGAGAATAATAATGAAGGGCGTTCTAGCATTGGAAGTGAAGGCAGTTCTGTCTTGGACATGGACAGCCCCAGCACCATTGAGAGCCAACAAAATATTGATTCCACAGGATTCTCCAACGTTAAAGCTCGTGACCCTCGGCTTGAATGCAATTTCAGGCCTAAAGTGGAGGAAAGTGTGATTCAAACAGATGAACCTTGCAATTATCTATTTTACAATAATATGGAGCCTGCTCCCCTCTTGTGGGAGTATAATTGGTCTTGCCTTTAGCAAGTAACAAGCATTATCTGATATTCCATTATAGTTACCATCCATTGTCTGGCATAGCTTTTTTCTTGAGAACATATATTATCCTTTGTGACATAAAGATAAGCAAAGCTTATTTA

Ace file of the UniGene uagpf_v2_unigene32037

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7796	5/10
SustainPine v2.0	sp_v2.0_unigene61005	3/10

Source	Descriptions	Term	Type	Identity
AutoFact	Homeobox-leucine zipper-like protein n=2 Tax=Picea RepID=Q3HRT1_PICGL	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	66%
Blast2go	hd domain class transcription factor	-	-	74%

Source	GOs	Term	Type	Identity
Blast2go	response to sucrose stimulus	GO:0009744	Biological Process	74%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	74%
Blast2go	leaf morphogenesis	GO:0009965	Biological Process	74%
Blast2go	cotyledon morphogenesis	GO:0048826	Biological Process	74%
Blast2go	transcription regulator activity	GO:0030528	Molecular Function	74%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	74%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	74%
Blast2go	nucleus	GO:0005634	Cellular Component	74%

Source	InterPros	Term	Type	Identity
Sma3	Homeodomain	IPR001356	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3		IPR012287	-	-
Sma3	Helix-turn-helix motif	IPR000047	-	-
Sma3	Leucine zipper, homeobox-associated	IPR003106	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NV37

Fln msg: Separated hits, possible frame ERROR between 142 and 201, your sequence is shorter than subject: 140 - 309

Fln protein: VVTLAVTHLRNKSQSYHDQKFQANSSTLLSVDQDLPILMMSATKVDxxxxxxxxxxxxxxxxxxxxxVLDMDSPSTIESQQNIDSTGFSNVKARDPRLECNFRPKVEESVIQTDEPCNYLFYNNMEPAPLLWEYNWSCL*

Protein Length: 141

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTAAGAAATAAATCACAGAGCTACCATGACCAGAAATTTCAGGCAAATTCTTCGACCTTGCTGTCGGTCGATCAGGACTTGCCCATTCTCATGATGTCTGCAACCAAAGTTGATTGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGTCTTGGACATGGACAGCCCCAGCACCATTGAGAGCCAACAAAATATTGATTCCACAGGATTCTCCAACGTTAAAGCTCGTGACCCTCGGCTTGAATGCAATTTCAGGCCTAAAGTGGAGGAAAGTGTGATTCAAACAGATGAACCTTGCAATTATCTATTTTACAATAATATGGAGCCTGCTCCCCTCTTGTGGGAGTATAATTGGTCTTGCCTTTAGCAAGTAACAAGCATTATCTGATATTCCATTATAGTTACCATCCATTGTCTGGCATAGCTTTTTTCTTGAGAACATATATTATCCTTTGTGACATAAAGATAAGCAAAGCTTATTTA

Fln Alignment:

uagpf_mira_c18264___VTHLRNKSQSYHDQKFQANSSTLLSVDQDLPILMMSATKVDCxxxxxxxxxxxxxxxxxxxxVLDMDSPSTIESQQNIDSTGFSNVKARDPRLECNFRPKVEESVIQTDEPCNYLFYNNMEPAPLLWEYNWS
A9NV37________________IERMSSKSQSCNDQKFQANSSKLQKDDQDLQLLMMSATKVDCxxxxxxxxxxxxxxxxxxxxVLDMDSPGTIDSQQNIDSIGFSNVKARDPRLECNFRPKVEENVSQADEPCNYLFYNNLETGPLLWDYNWS

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
113	66		33		0.997458
115		33		66	0.997458
116		75	25		0.996477
119		75	25		0.996477
120	75		25		0.996479
121		25		75	0.996477
122		25	75		0.996477
123	66			33	0.997452
124		25		75	0.996478
125		25	75		0.996478
126			33	66	0.997452
130			25	25	0.995533
132	66			33	0.997452
134	33		33	33	0.997753
135		66		33	0.997452
136	25	75			0.996481
140		33	66		0.997452
142		33		66	0.997452
143	33		66		0.997452
183		12		87	0.992556
184		87	12		0.992556
186	87		12		0.992556
187	12		87		0.992556
189	87	12			0.992556
194	85	14			0.993533
195	85			14	0.993533
199	85	14			0.993533
201		14	85		0.993533
202			85	14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain