SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene32020

Length: 727 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene32020

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9317	14/14

Source	Descriptions	Term	Type	Identity
AutoFact	RNA helicase, ATP-dependent, SK12/DOB1 protein [Arabidopsis thaliana] gb\|AAC67203.2\| expressed protein [Arabidopsis thaliana] gb\|AAO64196.1\| putative DEAD/DEAH box RNA helicase (HUA ENHANCER2) [Arabidopsis thaliana] gb\|AEC06028.1\| RNA helicase, ATP-depend	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	50%
Blast2go	hua enhancer 2	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	RNA metabolic process	GO:0016070	Biological Process	85%
Blast2go	specification of floral organ identity	GO:0010093	Biological Process	85%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	85%
Blast2go	ATP-dependent helicase activity	GO:0008026	Molecular Function	85%
Blast2go	ATP binding	GO:0005524	Molecular Function	85%
Blast2go	RNA helicase activity	GO:0003724	Molecular Function	85%
Blast2go	nucleus	GO:0005634	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3		IPR012287	-	-
Sma3	DSH, C-terminal	IPR012961	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	RNA helicase, ATP-dependent, SK12/DOB1	IPR016438	-	-
Sma3	Myb-like domain	IPR017877	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
199		12	87		0.992556
200			12	87	0.992556
202	87	12			0.992556
208		12	87		0.992556
209		12		87	0.992558
212		85	14		0.993533
213			14	85	0.993533
214		14	85		0.993533
215	85			14	0.993533
216	85		14		0.993533
224	12		87		0.992555
298		88		11	0.923834
301	88			11	0.923834
303	12		87		0.992558
305	87	12			0.992558
308	85		14		0.993533
309			14	85	0.993533
310	85	14			0.993533
314		14		85	0.993533
315	12		87		0.992554
317	87			12	0.992554
318	87	12			0.992554
362		71		28	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain