SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene32007

Length: 217 nt

UniGene Fasta

>uagpf_v2_unigene32007
CGTCGTGACCTTGGCTGTCACGTCGTGACCTTGGCTGTCACTCATTTTATTTAGCCGCTATCTGCAACAGCTTGTCATGGAATCTCTTGGAAAAGAGTTTGATTTAGATGGGAACCGGGTCAACCAAGGCCTAACTGTATATGGGAACAAAGGAAGCACAGATCAACATGCCTATATTCAACAACTGAGAGAAGGAGTTCACAACTTCTTTGTAACC

Ace file of the UniGene uagpf_v2_unigene32007

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17039	2/4

Source	Descriptions	Term	Type	Identity
AutoFact	Glucose-6-phosphate isomerase n=1 Tax=Picea sitchensis RepID=B8LKU0_PICSI	-	-	91%
FL-Next	sp=Glucose-6-phosphate isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	glucose-6-phosphate isomerase	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	starch metabolic process	GO:0005982	Biological Process	89%
Blast2go	positive regulation of flower development	GO:0009911	Biological Process	89%
Blast2go	catalytic activity	GO:0003824	Molecular Function	89%
Blast2go	cytosol	GO:0005829	Cellular Component	89%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	89%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	89%

Source	InterPros	Term	Type	e value	Identity
Sma3	Phosphoglucose isomerase (PGI)	IPR001672	-	0.0	-
Sma3	Phosphoglucose isomerase, conserved site	IPR018189	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKU0

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 178 aas, your sequence is shorter than subject: 72 - 634

Fln protein: VVTLAVTS*PWLSLILFSRYLQQLVMESLGKEFDLDGNRVNQGLTVYGNKGSTDQHAYIQQLREGVHNFFVT

Protein Length: 73

Fln nts: CGTCGTGACCTTGGCTGTCACGTCGTGACCTTGGCTGTCACTCATTTTATTTAGCCGCTATCTGCAACAGCTTGTCATGGAATCTCTTGGAAAAGAGTTTGATTTAGATGGGAACCGGGTCAACCAAGGCCTAACTGTATATGGGAACAAAGGAAGCACAGATCAACATGCCTATATTCAACAACTGAGAGAAGGAGTTCACAACTTCTTTGTAACC

Fln Alignment:

uagpf_mira_c18083___SLILFSRYLQQLVMESLGKEFDLDGNRVNQGLTVYGNKGSTDQHAYIQQLREGVHNFFVT
B8LKU0________________SLLLFSRYLQQLVMESLGKEFDLDGNRVNQGLSVYGNKGSTDQHAYIQQLREGVHNFFVT

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
25	33		66		0.997454
28	66			33	0.997476
43	66	33			0.997459

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain