SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene31963

Length: 777 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene31963

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene630	9/9

Source	Descriptions	Term	Type	Identity
AutoFact	Probable N(2),N(2)-dimethylguanosine tRNA methyltransferase 1 n=3 Tax=Arabidopsis RepID=TRM1_ARATH	-	-	65%
FL-Next	sp=Probable N(2),N(2)-dimethylguanosine tRNA methyltransferase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	67%
Blast2go	probable n -dimethylguanosine trna methyltransferase 1-like	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	tRNA (guanine-N(2)-)-methyltransferase.	EC:2.1.1.32	-	0.0	83%

Source	GOs	Term	Type	Identity
Blast2go	tRNA processing	GO:0008033	Biological Process	83%
Blast2go	RNA binding	GO:0003723	Molecular Function	83%
Blast2go	tRNA (guanine-N2-)-methyltransferase activity	GO:0004809	Molecular Function	83%

Source	InterPros	Term	Type	e value	Identity
Sma3	N2,N2-dimethylguanosine tRNA methyltransferase	IPR002905	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 47)

Position	A %	C %	G %	T %	Probability
57		33		66	0.997464
60			33	66	0.997464
96		25		75	0.996476
98			75	25	0.996476
101	75			25	0.996476
105		25	75		0.996476
106	75			25	0.996476
107	66			33	0.997452
108			33	66	0.997452
111	66			33	0.997452
112	66		33		0.997452
113		66		33	0.997452
117			66	33	0.997452
119	33			66	0.997452
139	80	20			0.995498
140	80		20		0.995498
143	80		20		0.995498
144			80	20	0.995498
148	75	25			0.996473
149	75			25	0.996473
150	80			20	0.995505
159	75			25	0.996473
160		25	75		0.996473
162	75	25			0.996473
163			75	25	0.996473
164	75	25			0.996473
165	25		75		0.996473
325		16		83	0.994514
326	83		16		0.994514
329	16	83			0.994514
330		16		83	0.994514
332			83	16	0.994514
336	80	20			0.995493
337	80			20	0.995493
341	20		80		0.995493
342		20	80		0.995493
343	80			20	0.995493
344	80	20			0.995493
345	25		75		0.996473
500		20		80	0.995496
503		20	80		0.995499
514	66		33		0.997452
515		33		66	0.997452
516		66		33	0.997452
517		66	33		0.997452
519		33		66	0.997452
524	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain