SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene31960

Length: 987 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene31960

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14216	16/17

Source	Descriptions	Term	Type	e value	Identity
AutoFact	UPF0497 membrane protein 1 n=1 Tax=Picea sitchensis RepID=U4971_PICSI	-	-	6.0e-35	42%
FL-Next	sp=CASP-like protein 5; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Blast2go	protein	-	-	4.05788e-41	60%

Source	GOs	Term	Type	e value	Identity
Blast2go	membrane	GO:0016020	Cellular Component	4.05788e-41	60%

Source	InterPros	Term	Type	e value	Identity
Sma3	Uncharacterised protein family UPF0497, trans-membrane plant subgroup	IPR006459	-	0.0	-
Sma3	Uncharacterised protein family UPF0497, trans-membrane plant	IPR006702	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 45)

Position	A %	C %	G %	T %	Probability
36			33	66	0.997461
37		66		33	0.997461
422	66			33	1.0
427	60	20		20	0.99255
428	20	20	60		0.99255
429	20			80	0.995493
483		88	11		0.923834
485	88	11			0.923834
486		88	11		0.923834
487		88		11	0.923834
489	11		88		0.923834
491		11	77		0.968132
496			12	87	0.992554
500		87		12	0.992554
502	14			85	0.993533
503		14		85	0.993533
571	87		12		0.992557
573		12		87	0.992557
577			12	87	0.992557
579		12		87	0.992557
580		12	87		0.992557
587	85		14		0.993533
591	83	16			0.994512
592			85	14	0.993541
593		14	85		0.993541
594	14		85		0.993541
611		12		87	0.992558
613			87	12	0.992558
620	83	16			0.994512
621	85	14			0.993539
625		83		16	0.994512
626			16	83	0.994512
632	83			16	0.994512
633		16		83	0.994512
635	83	16			0.994512
638	14			85	0.993541
647			20	80	0.999996
652		80		20	0.999996
653		80	20		0.999996
660		77		22	0.999999
661		77	22		0.999999
666			77	22	0.999999
668	22		77		0.999999
672		20		80	0.999996
739	11	88			0.923667

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain