SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene31889

Length: 523 nt

UniGene Fasta

>uagpf_v2_unigene31889
CGTCGTGACCTTGGCTGTCACTCAAGTTTTTCCCATTTTCTTCTTCATGCATCGCCATCAATACTCTTTTTCTTATTGATGAAGAAGAGATGCAGAGTGAGCTGAGAACAGATACTGGGCGATGTCATTGGTGTGCGGAATCCCCTTGCTGGAATGTGTGTATTGCCTAGCCTGTGCGCGATGGGCGTGGAAGCGGTGCCTGCATACCGGCGAACAAGACAGCGAGCGATGGGGCTATGCGAGGCGGGAGGAGTTCGAACCTGTGCCCCGTCTCTGCCGCCTCATCCTGTCCGTATACGAAGACGACATAAGGAAACCCCAGTGGGCTCCTCCGGGAGGATACGGGATCAATCCGGAGTGGATCCTCAAGAAAGTCACTTACGAGCAGACTGGGGGCCGAGCTCCTCCTTATGTTATCTACTTGGATCATGAAAATTGCGACATTGTGCTGGCAATCCGAGGCCTGAACATGGCGATGGAAAGCGATTATGCCATGCTCTGGGACAACAAGCTCGGCCAGAAG

Ace file of the UniGene uagpf_v2_unigene31889

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene663	12/12

Source	Descriptions	Term	Type	Identity
AutoFact	Calmodulin-binding heat-shock protein, putative n=1 Tax=Ricinus communis RepID=B9RIW9_RICCO	-	-	64%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	71%
Blast2go	calmodulin-binding heat-shock	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Triacylglycerol lipase.	EC:3.1.1.3	-	0.0	79%

Source	KEGGs	Term	Type	Identity
Blast2go	Glycerolipid metabolism	00561		79%
Blast2go	Metabolic pathways	01100		79%
Blast2go	Carboxylesterase.	EC:3.1.1.1	-	79%

Source	KEGGs	Term	Identity
Blast2go	Tropane, piperidine and pyridine alkaloid biosynthesis	00960	79%
Blast2go	Drug metabolism - other enzymes	00983	79%
Blast2go	Metabolic pathways	01100	79%
Blast2go	Biosynthesis of secondary metabolites	01110	79%

Source	GOs	Term	Type	Identity
Blast2go	response to stress	GO:0006950	Biological Process	79%
Blast2go	lipid catabolic process	GO:0016042	Biological Process	79%
Blast2go	calmodulin binding	GO:0005516	Molecular Function	79%
Blast2go	triglyceride lipase activity	GO:0004806	Molecular Function	79%
Blast2go	carboxylesterase activity	GO:0004091	Molecular Function	79%

Source	InterPros	Term	Type	Identity
Sma3	Beta-lactamase-like	IPR001279	-	-
Sma3	Transaldolase	IPR001585	-	-
Sma3	Lipase, class 3	IPR002921	-	-
Sma3	Mono-/di-acylglycerol lipase, N-terminal	IPR005592	-	-
Sma3	RNA-metabolising metallo-beta-lactamase	IPR011108	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: B9I480

Fln msg: Distance to subject end: 316 aas, your sequence is shorter than subject: 134 - 450

Fln protein: MSLVCGIPLLECVYCLACARWAWKRCLHTGEQDSERWGYARREEFEPVPRLCRLILSVYEDDIRKPQWAPPGGYGINPEWILKKVTYEQTGGRAPPYVIYLDHENCDIVLAIRGLNMAMESDYAMLWDNKLGQK

Protein Length: 135

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGTTTTTCCCATTTTCTTCTTCATGCATCGCCATCAATACTCTTTTTCTTATTGATGAAGAAGAGATGCAGAGTGAGCTGAGAACAGATACTGGGCG_-_ATGTCATTGGTGTGCGGAATCCCCTTGCTGGAATGTGTGTATTGCCTAGCCTGTGCGCGATGGGCGTGGAAGCGGTGCCTGCATACCGGCGAACAAGACAGCGAGCGATGGGGCTATGCGAGGCGGGAGGAGTTCGAACCTGTGCCCCGTCTCTGCCGCCTCATCCTGTCCGTATACGAAGACGACATAAGGAAACCCCAGTGGGCTCCTCCGGGAGGATACGGGATCAATCCGGAGTGGATCCTCAAGAAAGTCACTTACGAGCAGACTGGGGGCCGAGCTCCTCCTTATGTTATCTACTTGGATCATGAAAATTGCGACATTGTGCTGGCAATCCGAGGCCTGAACATGGCGATGGAAAGCGATTATGCCATGCTCTGGGACAACAAGCTCGGCCAGAAG

Fln Alignment:

uagpf_mira_c17342___MSLVCGIPLLECVYCLACARWAWKRCLHTGEQDSERWGYARREEFEPVPRLCRLILSVYEDDIRKPQWAPPGGYGINPEWILKKVTYEQTGGRAPPYVIYLDHENCDIVLAIRGLNMAMESDYAMLWDNKLGQK
B9I480________________MSILCGVPLLECVYCLACARWAWKRCLHTAGHDSETWGLATAEEFEPIPRLCRYILAVYEDDLRHPLWEPPGGYGIKPDWLILRRTYEDTHGRAPPYILYLDHDHADIVLAVRGLNLARESDYAVLLDNKLGKR

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
41			40	60	1.0
44			40	60	1.0
46		60	40		1.0
49		40	60		1.0
51	60			40	1.0
53		50	50		1.0
56		60		40	1.0
57	50		50		1.0
61	50	50			1.0
63	50	25			0.995533
64	25	75			0.996473
66	16	66		16	0.98887
171		90	10		0.90298
176	10		90		0.90298
178			90	10	0.90298
180			90	10	0.90298
463		66		33	0.997457
464		66		33	0.997457
465		33		66	0.997457
467	66	33			0.997453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain