SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene31873

Length: 683 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene31873

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene553	7/9
SustainPine v2.0	sp_v2.0_unigene20572	2/9

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative TIR-NBS-LRR protein n=1 Tax=Pinus monticola RepID=E9NZS6_PINMO	-	-	2.0e-24	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Blast2go	protein	-	-	0.0	56%

Source	GOs	Term	Type	Identity
Blast2go	innate immune response	GO:0045087	Biological Process	56%
Blast2go	signal transduction	GO:0007165	Biological Process	56%
Blast2go	transmembrane signaling receptor activity	GO:0004888	Molecular Function	56%
Blast2go	intrinsic to membrane	GO:0031224	Cellular Component	56%

Source	InterPros	Term	Type	e value	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
63		20	20	60	0.992609
66		75	25		0.996473
68		60	20		0.99255
69			25	75	0.996473
70		50	50		1.0
71	75		25		0.996473
72		60		20	0.99255
73		20		80	0.995505
76	25		25	50	0.995533
78			25	75	0.996473
85		25	75		0.996473
86			50	50	1.0
92		50		50	1.0
184			16	83	0.994516
188			83	16	0.994519
190	16			83	0.994516
192	83	16			0.994516
194			80	20	0.995493
196	80		20		0.995493
201			16	83	0.994512
203		16		83	0.994523
204	16			83	0.994523
205	80	20			0.995493
207		20	80		0.995493
208	20			80	0.995493
287	20	80			0.995493
307	66		33		0.997452
376		75		25	0.996486
397		25		75	0.996483
398			25	75	0.996483

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain