SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene31870

Length: 690 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene31870

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9307	11/11

Source	Descriptions	Term	Type	Identity
AutoFact	actin-related protein 5 [Arabidopsis thaliana] sp\|Q940Z2.2\|ARP5_ARATH RecName: Full=Actin-related protein 5 dbj\|BAB03145.1\| actin-like protein [Arabidopsis thaliana] gb\|ACV53017.1\| actin-related protein 5 [Arabidopsis thaliana] gb\|ACV53018.1\| actin-relate	-	-	55%
FL-Next	Isoform 3 of Actin-related protein 5 OS=Arabidopsis thaliana GN=ARP5	-	-	45%
Blast2go	actin-related protein 5	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	transcription, DNA-dependent	GO:0006351	Biological Process	75%
Blast2go	multicellular organismal development	GO:0007275	Biological Process	75%
Blast2go	actin filament-based process	GO:0030029	Biological Process	75%
Blast2go	DNA repair	GO:0006281	Biological Process	75%
Blast2go	structural constituent of cytoskeleton	GO:0005200	Molecular Function	75%
Blast2go	protein binding	GO:0005515	Molecular Function	75%
Blast2go	cytoplasm	GO:0005737	Cellular Component	75%
Blast2go	nucleoplasm	GO:0005654	Cellular Component	75%

Source	InterPros	Term	Type	e value	Identity
Sma3	Actin-like	IPR004000	-	0.0	-
Sma3	Actin, conserved site	IPR004001	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 44)

Position	A %	C %	G %	T %	Probability
158			20	80	0.995499
159			80	20	0.995499
161	83		16		0.994517
162	83			16	0.994517
166	83	16			0.994517
167			83	16	0.994517
168	80			20	0.995493
174	80			20	0.995493
177	83	16			0.994523
179	83	16			0.994523
180	83			16	0.994523
222		12	87		0.992555
227		87		12	0.992555
228	87		12		0.992555
230		12		87	0.992555
231		12	87		0.992555
236	85	14			0.993533
243		14	85		0.993533
244			85	14	0.993533
285	90	10			0.903175
288	90	10			0.903229
289			10	90	0.903229
291		90	10		0.903229
294		10		90	0.903297
297	88		11		0.923564
299		11		88	0.923564
300	88			11	0.923564
303	88			11	0.923564
304		11	88		0.923564
306	88	11			0.923564
307			87	12	0.992554
308	87	12			0.992554
309	14			85	0.993533
388		16		83	0.994514
389	83		16		0.994515
390	83			16	0.994515
392		83	16		0.994514
394			16	83	0.994515
395	16	83			0.994515
396		20		80	0.995493
397		20		80	0.995493
404		80		20	0.995493
405	80		20		0.995493
409		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain