SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene31840

Length: 334 nt

UniGene Fasta

>uagpf_v2_unigene31840
CGTCGTGACCTTGGCTGTCACTCAATTTTTAAAGCAGATTTACCCGGAATGAGGAAGGACGAGGTGAAGGTTCAGATTGACGAAGGGCGCGTGTTACAGATCCACGGCGAGCGTACCAAAGAGGACGTACAGAACGATGACAAGTGGCACCGCGTGGAAAGACAACATGGTAGCTTCATGCGCCGCTTCCGACTGCCAGATAATGCCAAGCTGGACGAGGTGAAGGCAACCATGGAGGACGGGGTGCTGACTGTGACGGTGCCCAAGGCGCCTCACCCCAAGCCGGAGGTCAAGGCGATCGACATCAACAGCAGCGGGTGAGAGCAACGAAGAA

Ace file of the UniGene uagpf_v2_unigene31840

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene30332	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	17.7 kDa heat shock protein n=1 Tax=Helianthus annuus RepID=Q39930_HELAN	-	-	3.0e-34	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Blast2go	cytosolic class i small heat shock protein type 1	-	-	1.12104e-44	87%

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein Hsp20	IPR002068	-	-
Sma3	Peptidase S24/S26A/S26B/S26C, beta-ribbon domain	IPR011056	-	-
Sma3	Peptidase S24/S26A/S26B	IPR019759	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ACL4

Fln msg: your sequence is shorter than subject: 107 - 158

Fln protein: RRDLGCHSIFKADLPGMRKDEVKVQIDEGRVLQIHGERTKEDVQNDDKWHRVERQHGSFMRRFRLPDNAKLDEVKATMEDGVLTVTVPKAPHPKPEVKAIDINSSG*

Protein Length: 108

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTTAAAGCAGATTTACCCGGAATGAGGAAGGACGAGGTGAAGGTTCAGATTGACGAAGGGCGCGTGTTACAGATCCACGGCGAGCGTACCAAAGAGGACGTACAGAACGATGACAAGTGGCACCGCGTGGAAAGACAACATGGTAGCTTCATGCGCCGCTTCCGACTGCCAGATAATGCCAAGCTGGACGAGGTGAAGGCAACCATGGAGGACGGGGTGCTGACTGTGACGGTGCCCAAGGCGCCTCACCCCAAGCCGGAGGTCAAGGCGATCGACATCAACAGCAGCGGGTGA___GAGCAACGAAGAA

Fln Alignment:

uagpf_mira_c17107___IFKADLPGMRKDEVKVQIDEGRVLQIHGERTKEDVQNDDKWHRVERQHGSFMRRFRLPDNAKLDEVKATMEDGVLTVTVPKAPHPKPEVKAIDIN
D5ACL4________________IFKADLPGLKKEDVKIEVEDDRVLQISGERKKEKEKKNDKWHRIERSHGKFLRRFRLPENAKVDEVKATMENGVLTVTVPKQPQPKPEVRAIKIS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain