SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene31795

Length: 364 nt

UniGene Fasta

>uagpf_v2_unigene31795
CGTCGTGACCTTGGCTGTCACTCATATTTGACATAGAGACTGGCCGTTGTTTTTTCCTTTCGTGGTCTTGTCTGTCACTCCAATGGCATCCTGAATGATGACGTGTATGAGTATGAGGTTGCTGACAGAGTAATGGCAGATCTAGCAGAAGTTGTGGCTCGCTCACTCTGGCAAATTCCGGGGAACACTTTTTCTTCCTCGTATTATGACTGCATTCCTTCAAGTCTCTGGAAGACACGGGAGTCAACATTGTTTTCTTATGTTATCAATGTGGAATCTTCACAACCTCATCATGGAGAAAATCCTGTAGAAGATGAGCCTTCGGAAAAAGTAGAGAGAATGATGTCTTAGAGATACAAGTAGT

Ace file of the UniGene uagpf_v2_unigene31795

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene75186	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	66%
Blast2go	predicted protein [Physcomitrella patens subsp. patens]	-	-	8.96543e-15	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9RMF7

Fln msg: Separated hits, possible frame ERROR between 62 and 67, Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 113 aas, your sequence is shorter than subject: 117 - 573

Fln protein: S*PWLSLIFDIETGRCFFLxxxLVCHSNGILNDDVYEYEVADRVMADLAEVVARSLWQIPGNTFSSSYYDCIPSSLWKTRESTLFSYVINVESSQPHHGENPVEDEPSEKVERMMS*

Protein Length: 118

Fln nts: CGTCGTGACCTTGGCTGTCACTCATATTTGACATAGAGACTGGCCGTTGTTTTTTCCTTTCxxxxxxTCTTGTCTGTCACTCCAATGGCATCCTGAATGATGACGTGTATGAGTATGAGGTTGCTGACAGAGTAATGGCAGATCTAGCAGAAGTTGTGGCTCGCTCACTCTGGCAAATTCCGGGGAACACTTTTTCTTCCTCGTATTATGACTGCATTCCTTCAAGTCTCTGGAAGACACGGGAGTCAACATTGTTTTCTTATGTTATCAATGTGGAATCTTCACAACCTCATCATGGAGAAAATCCTGTAGAAGATGAGCCTTCGGAAAAAGTAGAGAGAATGATGTCTTAGAGATACAAGTAGT

Fln Alignment:

uagpf_mira_c16812___SLIFDIETGRCFFLSxxLVCHSNGILNDDVYEYEVADRVMADLAEVVARSLWQIPG-NTFSSSYYDCIPSSLWK
A9RMF7________________SYVFDVETGRSFFLTxxLYTNANGVLNDDQYEYEFADRIFADLAEVLGRALWQIPDYSTTSSNSLDCTPSSLWE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain