SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene31665

Length: 479 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene31665
CGTCGTGACCTTGGCTGTCACTCATACTTGGAGGGGTTGGCAAAACCACCCTAGCAAAAGAGTTCTTTAACAATCAGAGATTAAAATACAAGCGATGTTGCTTTTTATTTGATATAAGAGACAATACTTTAACTACCTTGCAGAGCTACCTTCTAAAGGACTTAACTCAACGGCAAATGGAAATACGCAGCACTGATGAAGGCAAAGAAAAGCTCCGAAGTTATCTTCCATCTTCTGATTGTCTCATTATTTTAGATGATGTGGAGCATATTAAGCAGTTGGAGGCATTACTTTTACCAGCGAAAGATGCCCTTAAAACCAATAGCTTAATTTTAGTGACATCCCGCAATAAGGATGTTCTCATAAGATCACAGATTCCAGAGACGTCGATTTACATGCTACAAGGTCTCGAACCAGAGCATTCCCGAGAGCTCTTTTGCTGGCATGCATTTGGCAAGCCTCATCCCTGCCGTCTTCGC

Ace file of the UniGene uagpf_v2_unigene31665 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6712	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	Putative TIR/NBS/LRR disease resistance protein (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8I7_PINTA	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	59%
Blast2go	nbs-lrr protein g8106	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	defense response	GO:0006952	Biological Process	71%
Blast2go	cellular process	GO:0009987	Biological Process	71%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	71%

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRB4

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 177 aas, your sequence is shorter than subject: 159 - 579

Fln protein: S*PWLSLILGGVGKTTLAKEFFNNQRLKYKRCCFLFDIRDNTLTTLQSYLLKDLTQRQMEIRSTDEGKEKLRSYLPSSDCLIILDDVEHIKQLEALLLPAKDALKTNSLILVTSRNKDVLIRSQIPETSIYMLQGLEPEHSRELFCWHAFGKPHPCRLR

Protein Length: 160

Fln nts: CGTCGTGACCTTGGCTGTCACTCATACTTGGAGGGGTTGGCAAAACCACCCTAGCAAAAGAGTTCTTTAACAATCAGAGATTAAAATACAAGCGATGTTGCTTTTTATTTGATATAAGAGACAATACTTTAACTACCTTGCAGAGCTACCTTCTAAAGGACTTAACTCAACGGCAAATGGAAATACGCAGCACTGATGAAGGCAAAGAAAAGCTCCGAAGTTATCTTCCATCTTCTGATTGTCTCATTATTTTAGATGATGTGGAGCATATTAAGCAGTTGGAGGCATTACTTTTACCAGCGAAAGATGCCCTTAAAACCAATAGCTTAATTTTAGTGACATCCCGCAATAAGGATGTTCTCATAAGATCACAGATTCCAGAGACGTCGATTTACATGCTACAAGGTCTCGAACCAGAGCATTCCCGAGAGCTCTTTTGCTGGCATGCATTTGGCAAGCCTCATCCCTGCCGTCTTCGC

Fln Alignment:

uagpf_mira_c16256___LGGVGKTTLAKEFFNNQRLKYKRCCFLFDIRDNTLTTLQSYLLKDLTQRQMEIRSTDEGKEKLRSYLPSS-DCLIILDDVEHIKQLEALLLPAKDALKTNSLILVTSRNKDVL-IRSQIPETSIYMLQGLEPEHSRELFCWHAFGKPHP
B8LRB4________________LGGIGKTTLAKEFFNSERSNYTRFCFLFDVRSKSLHSLQSSILHDLIQNNVQINGVDEGKEKLKMHLSSSHKALIVLDDVDQSDQLDALLFPIKDVIHPDSLILITSRNKDVLTTNSEIVESSIYTLKGLNQEQSRELFCRYAFGQPLP

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
135			66	33	0.997476
180		66		33	0.997471
214		66	33		0.997455
234		33		66	0.997471
379	33		66		0.997454
394	33			66	0.997476
398	66	33			0.997458
402			33	66	0.997457
403	33	66			0.997457
404		33		66	0.997457

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain