SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene31612

Length: 446 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene31612
CATGAATGAATACTACTCTTAATCAAGAAGACTTTGATACAATAGTAGAATTAAGCAAATTTCAGGGTCACCCAGATGCTCTTGATGGAATACAACCTGCAATCAAAGCAGCATTAACTAAGGCCTATAAACAAAATGAGCAATCCCATCGTGTGCGGTCGGCTGATTTACTGCCAGCCATCCTCCTTCCGGGTCAAAAGAAGACGCCCAAATCAAAAAGAGTTGCTTCACTTTTGTCAACGGTTGATGAATATCCTTTGGAGAACAAAGAGGATGAAGCTGCAGAGGACGAGGAGGATTCTAGCGATGAAGATGACTTTGAAGCTTCAGCCCTGAAGGATGGAAAGCTAGAGTTGAGCCTTGAAGATAATAAATCAAAAGGAATTGAGATACAGCTGGATATAAAAAACAAGGATTCGCAGTGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene uagpf_v2_unigene31612 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1311	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Replication factor C large subunit (Fragment) n=2 Tax=Poaceae RepID=Q8L6A5_9POAL	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	replication factor c subunit 1-like	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	response to DNA damage stimulus	GO:0006974	Biological Process	78%
Blast2go	regulation of chromatin silencing	GO:0031935	Biological Process	78%
Blast2go	regulation of histone H3-K9 methylation	GO:0051570	Biological Process	78%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	78%
Blast2go	DNA replication	GO:0006260	Biological Process	78%
Blast2go	DNA clamp loader activity	GO:0003689	Molecular Function	78%
Blast2go	ATP binding	GO:0005524	Molecular Function	78%
Blast2go	DNA replication factor C complex	GO:0005663	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	BRCT domain	IPR001357	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-3	IPR011703	-	-
Sma3	DNA replication factor C, large subunit	IPR012178	-	-
Sma3	DNA replication factor RFC1, C-terminal	IPR013725	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXU4

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 141 - 550

Fln protein: *MNTTLNQEDFDTIVELSKFQGHPDALDGIQPAIKAALTKAYKQNEQSHRVRSADLLPAILLPGQKKTPKSKRVASLLSTVDEYPLENKEDEAAEDEEDSSDEDDFEASALKDGKLELSLEDNKSKGIEIQLDIKNKDSQ*

Protein Length: 142

Fln nts: CATGAATGAATACTACTCTTAATCAAGAAGACTTTGATACAATAGTAGAATTAAGCAAATTTCAGGGTCACCCAGATGCTCTTGATGGAATACAACCTGCAATCAAAGCAGCATTAACTAAGGCCTATAAACAAAATGAGCAATCCCATCGTGTGCGGTCGGCTGATTTACTGCCAGCCATCCTCCTTCCGGGTCAAAAGAAGACGCCCAAATCAAAAAGAGTTGCTTCACTTTTGTCAACGGTTGATGAATATCCTTTGGAGAACAAAGAGGATGAAGCTGCAGAGGACGAGGAGGATTCTAGCGATGAAGATGACTTTGAAGCTTCAGCCCTGAAGGATGGAAAGCTAGAGTTGAGCCTTGAAGATAATAAATCAAAAGGAATTGAGATACAGCTGGATATAAAAAACAAGGATTCGCAGTGA___GTGACAGCCAAGGTCACGACG

Fln Alignment:

uagpf_mira_c16014___TLNQEDFDTIVELSKFQGHPDALDGIQPAIKAALTKAYKQNEQSHRVRSADLLPAILLPGQKKTPKSKRVASLLSTVDEYPLENK
A9NXU4________________SLNQEDFDTIVELSKFQGHPDPLDGIQPAVKAALTKAYKQNEKSHRVRSSDLLPAILLPGQKKTPKSKRVASLLATVDEYPLENK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain