SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene31549

Length: 491 nt

UniGene Fasta

>uagpf_v2_unigene31549
CGTCGTGACCTTGGCTGTCACTCATGGTGTTACTATGGTTGGTATTCACGAACGTTCGGCTCGAGAAAAGATCTATACAAATAGTGTGGCTCATGTTATGAATGATGAAACTACTAGAAAATATTTGCAATCGATAAAACGGCTTATGACATTATGCCCTTGGCGTTACCCTTCCTTGCCATCCAAATCAGTTGAATTTAACAGTCTGGCTAACGGCAGTGATTTACATTCACTTTTATTAGAAGAGAAGCAGAAGACGACTAGCCAAAATGCTGAGGAAAGGCTGAGAATAACGGCAGGACCAGTAGGAAAGGAGTCCGTATAAGTTTGTCTTTGTAACAAACAAGCCCACTGTAATTTGATTTTGTCCAGCGGTAAATGATTCATGTCATTTGATGACTGTTGTGTTCATATTTATGTATATTCTCCTCAGAATTAAAAGTGGTTACAAATATACAATGTTGTAACTCAAATTCAGTAAACAGTTCAAT

Ace file of the UniGene uagpf_v2_unigene31549

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene36261	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	splicing factor Prp18-like protein [Arabidopsis thaliana] gb\|AAD25794.1\|AC006550_2 Similar to gb\|U51990 pre-mRNA-splicing factor hPrp18 from Homo sapiens. ESTs gb\|T46391 and gb\|AA721815 come from this gene [Arabidopsis thaliana] gb\|AAK25940.1\|AF360230_1 u	-	-	2.0e-31	76%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	86%
Blast2go	pre-mrna-splicing factor 18-like	-	-	4.38606e-43	85%

Source	InterPros	Term	Type	Identity
Sma3	Splicing factor motif	IPR003648	-	-
Sma3	Prp18	IPR004098	-	-
Sma3	Pre-mRNA processing factor 4 (PRP4)-like	IPR014906	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: A9TW50

Fln msg: your sequence is shorter than subject: 108 - 416

Fln protein: VVTLAVTHGVTMVGIHERSAREKIYTNSVAHVMNDETTRKYLQSIKRLMTLCPWRYPSLPSKSVEFNSLANGSDLHSLLLEEKQKTTSQNAEERLRITAGPVGKESV*

Protein Length: 109

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGGTGTTACTATGGTTGGTATTCACGAACGTTCGGCTCGAGAAAAGATCTATACAAATAGTGTGGCTCATGTTATGAATGATGAAACTACTAGAAAATATTTGCAATCGATAAAACGGCTTATGACATTATGCCCTTGGCGTTACCCTTCCTTGCCATCCAAATCAGTTGAATTTAACAGTCTGGCTAACGGCAGTGATTTACATTCACTTTTATTAGAAGAGAAGCAGAAGACGACTAGCCAAAATGCTGAGGAAAGGCTGAGAATAACGGCAGGACCAGTAGGAAAGGAGTCCGTATAA___GTTTGTCTTTGTAACAAACAAGCCCACTGTAATTTGATTTTGTCCAGCGGTAAATGATTCATGTCATTTGATGACTGTTGTGTTCATATTTATGTATATTCTCCTCAGAATTAAAAGTGGTTACAAATATACAATGTTGTAACTCAAATTCAGTAAACAGTTCAAT

Fln Alignment:

uagpf_mira_c15677___GVTMVGIHERSAREKIYTNSVAHVMNDETTRKYLQSIKRLMTLCPWRYPSLPSKSVEFNSLANGSDLHSLLLEEKQKTTSQNAEERLRITA
A9TW50________________GVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSIKRLMTLCQRRYPSMPSKSVEFNSLANGSDLKSLLTEEKNKTGSVAAEERLRLLA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain