SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene31508

Length: 446 nt

UniGene Fasta

>uagpf_v2_unigene31508
CGTCGTGACCTTGGCTGTCGTGACTTTGGCTGTCCGTCGTGTTCTTGGGTGTCCCTTAAGTCATGCAAAGGCATTCTACTTTTTGGACCCCCTGGAACAGGGAAAACAATGCTAGCAAAGGCCCTTGCGACTGAGGCCAATGCCAGCTTTATAAATGTCTCAATGTCTACCATAACTTCAAAGTGGTTTGGAGAAGATGAGAAGAATGTAAGGGCATTGTTCTCTTTGGCTGCAAAAGTTTCCCCTACGATTATTTTCATTGATGAGGTTGACAGCATGTTAGGCCAAAGGTCTAGAGTTGGTGAACACGAGGCAATGAGGAAAATAAAGAACGAGTTTATGGCTCACTGGGATGGTTTGCTATCAAAGCTGCAGAGCGTGTTCTTGTTCTCGCTGCAACTAACAGACCTTTCGATTTGGATGAAGCTATAATCAGACGGTTTCGC

Ace file of the UniGene uagpf_v2_unigene31508

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2465	4/5

Source	Descriptions	Term	Type	Identity
AutoFact	P-loop containing nucleoside triphosphate hydrolase-like protein n=6 Tax=Arabidopsis RepID=F4I5A3_ARATH	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	61%
Blast2go	p-loop containing nucleoside triphosphate hydrolase-like protein	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	Adenosinetriphosphatase.	EC:3.6.1.3	-	0.0	75%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Purine metabolism	00230		0.0	75%

Source	GOs	Term	Type	Identity
Blast2go	pollen sperm cell differentiation	GO:0048235	Biological Process	75%
Blast2go	ATPase activity	GO:0016887	Molecular Function	75%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	75%

Source	InterPros	Term	Type	Identity
Sma3	Forkhead-associated (FHA) domain	IPR000253	-	-
Sma3		IPR001984	-	-
Sma3	CDC48, N-terminal subdomain	IPR003338	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	CDC48, domain 2	IPR004201	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	ATPase, AAA-type, CDC48	IPR005938	-	-
Sma3	MIT	IPR007330	-	-
Sma3	Aspartate decarboxylase-like fold	IPR009010	-	-
Sma3	Vps4 oligomerisation, C-terminal	IPR015415	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	-
Sma3	Formate C-acetyltransferase glycine radical, conserved site	IPR019777	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AE60

Fln msg: Overlapping hits, possible frame ERROR between 357 and 357, Distance to subject end: 144 aas, your sequence is shorter than subject: 149 - 388

Fln protein: RRDLGCRDFGCPSCSWVSLKSCKGILLFGPPGTGKTMLAKALATEANASFINVSMSTITSKWFGEDEKNVRALFSLAAKVSPTIIFIDEVDSMLGQRSRVGEHEAMRKIKNEFMAHWDxxAIKAAERVLVLAATNRPFDLDEAIIRRFR

Protein Length: 150

Fln nts: CGTCGTGACCTTGGCTGTCGTGACTTTGGCTGTCCGTCGTGTTCTTGGGTGTCCCTTAAGTCATGCAAAGGCATTCTACTTTTTGGACCCCCTGGAACAGGGAAAACAATGCTAGCAAAGGCCCTTGCGACTGAGGCCAATGCCAGCTTTATAAATGTCTCAATGTCTACCATAACTTCAAAGTGGTTTGGAGAAGATGAGAAGAATGTAAGGGCATTGTTCTCTTTGGCTGCAAAAGTTTCCCCTACGATTATTTTCATTGATGAGGTTGACAGCATGTTAGGCCAAAGGTCTAGAGTTGGTGAACACGAGGCAATGAGGAAAATAAAGAACGAGTTTATGGCTCACTGGGATxxxxxxGCTATCAAAGCTGCAGAGCGTGTTCTTGTTCTCGCTGCAACTAACAGACCTTTCGATTTGGATGAAGCTATAATCAGACGGTTTCGC

Fln Alignment:

uagpf_mira_c15462___KGILLFGPPGTGKTMLAKALATEANASFINVSMSTITSKWFGEDEKNVRALFSLAAKVSPTIIFIDEVDSMLGQRSRVGEHEAMRKIKNEFMAHWDGFAIKAAERVLVLAATNRPFDLDEAIIRR
D5AE60________________KGVLLYGPPGTGKTLLAKAIARESGAVFINVRVANLMSKWFGDSQKLVTAVFTLAQKLQPAIIFLDEVDSFLGQR-RSSEQEAFTNMKTEFMALWDGFTTDQTARVTVLAATNRPEELDEAILRR

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
36	50	50			1.0
37		33	66		0.997452
38	33			66	0.997452
40	25		50	25	0.995595
43	50			50	1.0
44		50		50	1.0
45	25	50		25	0.995595
46	50			50	1.0
47	25		25	50	0.995537
50		50	50		1.0
51			50	50	1.0
56	50	50			1.0
59		50		50	1.0
63		50		50	1.0
131		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain