SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene31501

Length: 582 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene31501

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene250	8/9

Source	Descriptions	Term	Type	Identity
AutoFact	GroES-like zinc-binding alcohol dehydrogenase-like protein [Arabidopsis thaliana] emb\|CAB88049.1\| quinone reductase-like protein [Arabidopsis thaliana] gb\|AAN41337.1\| putative quinone reductase [Arabidopsis thaliana] dbj\|BAD94498.1\| quinone reductase-like	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	quinone oxidoreductase-like protein 2 homolog	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	NADPH:quinone reductase.	EC:1.6.5.5	-	0.0	80%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	80%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	80%
Blast2go	protein binding	GO:0005515	Molecular Function	80%
Blast2go	NADPH:quinone reductase activity	GO:0003960	Molecular Function	80%
Blast2go	peroxisome	GO:0005777	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	Alcohol dehydrogenase GroES-like	IPR013154	-	-
Sma3	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	-
Sma3	Alcohol dehydrogenase, C-terminal	IPR013149	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Quinone oxidoreductase/zeta-crystallin, conserved site	IPR002364	-	-

Full-Lengther Next Prediction

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
88	33	66			0.997452
102			33	66	0.997476
103	66		33		0.997476
128	80	20			0.9955
129	80		20		0.9955
130	80	20			0.9955
133			20	80	0.995498
134	20		80		0.995498
135		25		75	0.996473
136		25		75	0.996473
144	75			25	0.996473
146	75			25	0.996473
147	75	25			0.996473
150	75	25			0.996473
151			75	25	0.996473
154	25		75		0.996473
192		37	62		1.0
196	37		62		1.0
197	62	37			1.0
202		57	42		1.0
204	57			42	1.0
210			57	42	1.0
213	14	28			1.0
298		11		88	0.923646
301	88	11			0.923646
303			88	11	0.923695
305	11			88	0.923646
306		11		88	0.923646
307		11	88		0.923646
309		87		12	0.992554
310	87		12		0.992554
317	12		87		0.992554
319	87			12	0.992554
320		12	87		0.992554
509			75	25	0.996473
510	40			60	1.0
511	40			60	1.0
512	40	60			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain