SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene31497

Length: 598 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene31497

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21025	13/13

Source	Descriptions	Term	Type	Identity
AutoFact	Dipeptidyl-peptidase, putative n=1 Tax=Ricinus communis RepID=B9RNE4_RICCO	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	probable glutamyl chloroplastic-like	-	-	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	0.0	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase S9, prolyl oligopeptidase, catalytic domain	IPR001375	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 47)

Position	A %	C %	G %	T %	Probability
49			50	50	1.0
50		25	25	50	0.995595
51	25	50	25		0.995595
52			50	50	1.0
54		50	50		1.0
57		50		50	1.0
58		50		50	1.0
61			33	66	1.0
70		33		66	0.997452
71	25	25	50		0.995533
72	33			66	0.997452
112	83			16	0.994515
113	83		16		0.994515
117	83	16			0.994515
123		80	20		0.995493
124	80	20			0.995493
126			16	83	0.994523
128		16		83	0.994523
129	20		80		0.995493
164		14		85	0.993535
173	85	14			0.993535
176		85	14		0.993541
177		85	14		0.993541
179		85		14	0.993541
182		16	83		0.994512
212		12	87		0.992557
214		87		12	0.992556
218	87	12			0.992558
219	87			12	0.992558
224	85			14	0.993533
226	85			14	0.993533
227	85	14			0.993533
231		11		88	0.923646
233		12		87	0.992554
234	11	11		77	0.968146
241			88	11	0.923646
242	87			12	0.992554
247	87		12		0.992554
249	87	12			0.992554
251	87	12			0.992554
253		14		85	0.993533
254	14			85	0.993533
343		71		28	1.0
356	12			87	0.992554
357		12	87		0.992554
358		87		12	0.992554
607	33	66			0.997459

SSRs (tot: 1)

Start position	End position	Sequence	Length
385	397	TTAT TTAT TTAT T	13

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain