SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene31379

Length: 634 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene31379

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10145	10/11

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[RTKL] COG0515 Serine/threonine protein kinase	-	-	4.0e-18	26%
FL-Next	tr=Somatic embryogenesis receptor-like kinase 1; Pinus massoniana.	-	-	0.0	30%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Full-Lengther Next Prediction

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
160		33		66	0.997452
161			25	75	0.99649
168		33		66	0.997452
169		25		75	0.99649
172		66	33		0.997452
173	66		33		0.997452
174		33	66		0.997452
179	33		66		0.997452
180	66	33			0.997452
183	33		66		0.997452
204		66		33	1.0
221		10		90	0.903134
222			10	90	0.903134
223		90		10	0.903076
229		88		11	0.923564
239	10		90		0.90298
240	90	10			0.90298
243	10			90	0.90298
386	44		55		1.0
481		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain