SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene31374

Length: 780 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene31374

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8235	11/11

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Alcohol dehydrogenase transcription factor myb/SANT-like protein [Arabidopsis thaliana] gb\|AAC27475.1\| unknown protein [Arabidopsis thaliana] gb\|AEC10459.1\| Alcohol dehydrogenase transcription factor myb/SANT-like protein [Arabidopsis thaliana]	-	-	4.0e-22	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	37%
Blast2go	alcohol dehydrogenase transcription factor myb sant-like protein	-	-	0.0	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	0.0	62%

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	MADF domain	IPR006578	-	-
Sma3	Myb-like domain	IPR017877	-	-

Full-Lengther Next Prediction

SNPs (tot: 81)

Position	A %	C %	G %	T %	Probability
28			66	33	0.997476
29		33		66	0.997476
33			66	33	0.997476
34	66	33			0.997476
48	33	66			0.997453
49	33			66	0.997453
51	50	25	25		0.995544
52	75			25	0.996476
55	75			25	0.996476
58		25		75	0.996476
60		75		25	0.996478
61		66		33	0.997452
63		66	33		0.997452
66		66	33		0.997452
189		20	80		0.995498
191	80			20	0.995499
192		20	80		0.995499
194	80			20	0.995498
196	20		80		0.995498
200	75			25	0.996473
201	75		25		0.996473
202		75	25		0.996473
203	75	25			0.996473
204			75	25	0.996473
206	75			25	0.996473
208	25		75		0.996473
209	75	25			0.996473
211		25	75		0.996473
212	25		75		0.996473
222		28	71		1.0
224			71	28	1.0
228	71	28			1.0
230		66		33	1.0
232			33	66	1.0
241		83		16	0.994512
246	83			16	0.994512
440		75	25		0.996479
441	75			25	0.996479
443	75		25		0.996481
444	75			25	0.996483
447		25		75	0.996479
449			75	25	0.996479
450	66			33	0.997452
452	66		33		0.997452
453	66	33			0.997452
454			66	33	0.997452
455		66	33		0.997452
460			66	33	0.997452
491		33	66		0.997452
493			66	33	0.997452
494		33	66		0.997452
495	75		25		0.996477
497		75	25		0.996476
500		25	75		0.996477
501		75		25	0.996486
502			75	25	0.99649
505		25	75		0.99649
507			33	66	0.997452
508		66		33	0.997452
511		33	66		0.997452
512			66	33	0.997452
513		33		66	0.997452
514	33		66		0.997452
516			75	25	0.996475
545		20	80		0.995495
546	80		20		0.995495
547	80			20	0.995495
552	20	80			0.995497
556	75			25	0.996473
559		25	75		0.996473
560		75		25	0.996473
563		25	75		0.996473
565		25		75	0.996473
569	25		75		0.996473
625		80		20	0.995494
626	80	20			0.995495
627	80		20		0.995495
641	75			25	0.996479
642	75			25	0.996479
643		75		25	0.996479
645	75		25		0.996479

SSRs (tot: 1)

Start position	End position	Sequence	Length
611	632	ACAACC ACAACC ACAACC ACAA	22

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain