SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene31323

Length: 421 nt

UniGene Fasta

>uagpf_v2_unigene31323
CGTCGTGACCTTGGCTGTCACTCATTTTAGATACACTGGAGTTCACTTCCGATAGGAAACGCATGTCGGTGGTTGTCAGGGATTGCCAGAATGGAAGGATAATGCTTCTGTCCAAAGGAGCAGATGAAGCAATCTTTCCATGCATTTGTAGTGAGCAACAAGTGAGGCCTGTGGTGGAGGCAGTTGAGAATTTCGCACAGTTGGGTTTGAGAACATTATGTTTGGCATGGAGGGACTTGAAGGAAGATGAATACAGGGATTGGTCCATTATGTACAAGGAAGCAAGTAGTTCTTTGATTGATAGAGAGTGGAAGGTAGCTGAGGTTTGCCAGCAGTTAGAGTACAATCTTGAACTACTTGGGGCTACTGCCATTGAAGATCGTTTGCAGGATGGTGTTCCAGAAACAATTGAGACTCTAAG

Ace file of the UniGene uagpf_v2_unigene31323

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene36116	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: similar to haloacid dehalogenase-like hydrolase family protein n=1 Tax=Vitis vinifera RepID=UPI0001984399	-	-	78%
FL-Next	sp=Phospholipid-transporting ATPase 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	71%
Blast2go	phospholipid-translocating atpase	-	-	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity	GO:0016787	Molecular Function	0.0	85%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	ATPase, P-type cation exchange, alpha subunit	IPR006069	-	-
Sma3	ATPase, P-type, phospholipid-translocating, flippase	IPR006539	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	HAD superfamily hydrolase-like, type 3	IPR013200	-	-
Sma3		IPR017442	-	-
Sma3	Somatotropin hormone, conserved site	IPR018116	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P98205

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 481 aas, your sequence is shorter than subject: 139 - 1107

Fln protein: S*PWLSLILDTLEFTSDRKRMSVVVRDCQNGRIMLLSKGADEAIFPCICSEQQVRPVVEAVENFAQLGLRTLCLAWRDLKEDEYRDWSIMYKEASSSLIDREWKVAEVCQQLEYNLELLGATAIEDRLQDGVPETIETL

Protein Length: 140

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTAGATACACTGGAGTTCACTTCCGATAGGAAACGCATGTCGGTGGTTGTCAGGGATTGCCAGAATGGAAGGATAATGCTTCTGTCCAAAGGAGCAGATGAAGCAATCTTTCCATGCATTTGTAGTGAGCAACAAGTGAGGCCTGTGGTGGAGGCAGTTGAGAATTTCGCACAGTTGGGTTTGAGAACATTATGTTTGGCATGGAGGGACTTGAAGGAAGATGAATACAGGGATTGGTCCATTATGTACAAGGAAGCAAGTAGTTCTTTGATTGATAGAGAGTGGAAGGTAGCTGAGGTTTGCCAGCAGTTAGAGTACAATCTTGAACTACTTGGGGCTACTGCCATTGAAGATCGTTTGCAGGATGGTGTTCCAGAAACAATTGAGACTCTAAG

Fln Alignment:

uagpf_mira_c14553___ILDTLEFTSDRKRMSVVVRDCQNGRIMLLSKGADEAIFPCICSEQQVRPVVEAVENFAQLGLRTLCLAWRDLKEDEYRDWSIMYKEASSSLIDREWKVAEVCQQLEYNLELLGATAIEDRLQDGVPETIETL
P98205________________VLEILEFTSDRKRMSVVVKDCQNGKIILLSKGADEAILPYARAGQQTRTIGDAVEHYSQLGLRTLCLAWRELEENEYLEWSVKFKEASSLLVDREWRIAEVCQRLEHDLYILGVTAIEDRLQDGVPETIETL

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
180		25	75		0.996477
183		25	75		0.996477
185	75			25	0.996477
187	25		75		0.996477
190		25	75		0.996477
194	66		33		0.997452
195		33	66		0.997452
196	66			33	0.997452
197	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain