SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene31259

Length: 469 nt

UniGene Fasta

>uagpf_v2_unigene31259
CGTCGTGACCTTGGCTGTCACTCAATCTGTCTGGAGTTGTGAAATAGATCAATTCCAATAGATATAAAACGTCGTGACCTTGGCTGTCACTCATATCATAGTAGAAGACAATGGCAGCAGCGGAAGAGGAAAACACAACCCTGAGGCAGATTGCAGAAGCATTTCAAGAATTGGCTCTGGCTCTCAACTCGGATAATGGTGATATTCAAGTGGCCCGCTTCTCCCATGCTTGTTCATTGGTCTCTGTACTCTTTGGGTACCTAGGGATCGCCTTCAAGTTTGCAGAAATCGACTATGTTGCCAAGGTCCAATCATTGACAGAAGCATCAAATTCTTCTGCCACTTTGCAGGCATTAGTGGAATTCGACATTATATCTGATTCGTAGTGATGAGAGGTAGCCATTCCCGTAACTTGCTAAGAGTTAAACGAGGGCTGGACATGGTCAAAGTGTTATTTGAACAACTTCTT

Ace file of the UniGene uagpf_v2_unigene31259

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23788	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	glycolipid transfer protein-like protein [Arabidopsis thaliana] gb\|AAC16265.1\| unknown protein [Arabidopsis thaliana] gb\|AAS76271.1\| At2g34690 [Arabidopsis thaliana] gb\|AEC09010.1\| glycolipid transfer protein-like protein [Arabidopsis thaliana]	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	73%
Blast2go	protein	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	cell death	GO:0008219	Biological Process	78%
Blast2go	response to salicylic acid stimulus	GO:0009751	Biological Process	78%
Blast2go	defense response to bacterium, incompatible interaction	GO:0009816	Biological Process	78%
Blast2go	sphingosine transmembrane transporter activity	GO:0010175	Molecular Function	78%
Blast2go	protein binding	GO:0005515	Molecular Function	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycolipid transfer protein domain	IPR014830	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ACB1

Fln msg: Separated hits, possible frame ERROR between 383 and 386, Distance to subject end: 84 aas, your sequence is shorter than subject: 120 - 203

Fln protein: MAAAEEENTTLRQIAEAFQELALALNSDNGDIQVARFSHACSLVSVLFGYLGIAFKFAEIDYVAKVQSLTEASNSSATLQALVEFDIISDxxVMRGSHSRNLLRVKRGLDMVKVLFEQLL

Protein Length: 121

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTGTCTGGAGTTGTGAAATAGATCAATTCCAATAGATATAAAACGTCGTGACCTTGGCTGTCACTCATATCATAGTAGAAGACA_-_ATGGCAGCAGCGGAAGAGGAAAACACAACCCTGAGGCAGATTGCAGAAGCATTTCAAGAATTGGCTCTGGCTCTCAACTCGGATAATGGTGATATTCAAGTGGCCCGCTTCTCCCATGCTTGTTCATTGGTCTCTGTACTCTTTGGGTACCTAGGGATCGCCTTCAAGTTTGCAGAAATCGACTATGTTGCCAAGGTCCAATCATTGACAGAAGCATCAAATTCTTCTGCCACTTTGCAGGCATTAGTGGAATTCGACATTATATCTGATTCxxxAGTGATGAGAGGTAGCCATTCCCGTAACTTGCTAAGAGTTAAACGAGGGCTGGACATGGTCAAAGTGTTATTTGAACAACTTCTT

Fln Alignment:

uagpf_mira_c14379___MAAAEEENTTLRQIAEAFQELALALNSDNGDIQVARFSHACSLVSVLFGYLGIAFKFAEIDYVAKVQSLTEASNSSATLQALVEFDIISDSxVMRGSHSRNLLRVKRGLDMVKVLFEQLL
D5ACB1________________MAANTKTNRPLRQIAEAFEELALALKSGSGDIQLAPFCRACSRVSVLFGYLGIAFKFAEKDFVDKIQSLTEASSSSATLQALVDSDIKSGSxVRGGSYSNNLLLVKRGLDMVKVLFERLL

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
70		66		33	0.997476
71			66	33	0.997476
75	33		66		0.997476
76	33			66	0.997476
79	33	66			0.997476
80	33	66			0.997476
88	25			75	0.996473
90	66			33	0.997452
91		66	33		0.997452
96	75			25	0.996474

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain