SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene31146

Length: 225 nt

UniGene Fasta

>uagpf_v2_unigene31146
CGTCGTGACCTTGGCTGTCACTCAGTTTACTCGAGCTATGGTAGTGGAGCTTACCTATTTAAGCCAACTGGAGAAGCAGAGTCTGTTGTGCAGCCAGGTGGAATATTGGTGATATCAGAGGGTCCTCTTCTGCAGGAGGTATACTCATATCCTCAGACAATATGGGATCAAACTCCCATCTCCCATGTCACTCGTATTTATAATGGGAAAGATACAGTTCAGGAA

Ace file of the UniGene uagpf_v2_unigene31146

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene53805	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Mannosidase alpha class 2a, putative n=1 Tax=Ricinus communis RepID=B9RUH3_RICCO	-	-	1.0e-19	71%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	66%
Blast2go	alpha-mannosidase-like protein	-	-	6.52608e-24	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Alpha-mannosidase.	EC:3.2.1.24	-	6.52608e-24	81%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Other glycan degradation	00511		6.52608e-24	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein N-linked glycosylation	GO:0006487	Biological Process	6.52608e-24	81%
Blast2go	alpha-mannosidase activity	GO:0004559	Molecular Function	6.52608e-24	81%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	6.52608e-24	81%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 38, core	IPR000602	-	-
Sma3	Glycosyl hydrolases 38, C-terminal	IPR011682	-	-
Sma3	Glycosyl hydrolase, family 13, all-beta	IPR013780	-	-
Sma3	Glycoside hydrolase, family 38, central domain	IPR015341	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6HV68

Fln msg: Distance to subject end: 305 aas, your sequence is shorter than subject: 75 - 1149

Fln protein: RRDLGCHSVYSSYGSGAYLFKPTGEAESVVQPGGILVISEGPLLQEVYSYPQTIWDQTPISHVTRIYNGKDTVQE

Protein Length: 76

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTACTCGAGCTATGGTAGTGGAGCTTACCTATTTAAGCCAACTGGAGAAGCAGAGTCTGTTGTGCAGCCAGGTGGAATATTGGTGATATCAGAGGGTCCTCTTCTGCAGGAGGTATACTCATATCCTCAGACAATATGGGATCAAACTCCCATCTCCCATGTCACTCGTATTTATAATGGGAAAGATACAGTTCAGGAA

Fln Alignment:

uagpf_mira_c14151___SVYSSYGSGAYLFKPTGEAESVVQPGGILVISEGPLLQEVYSYPQTIWDQTPISHVTRIYNG-KDTVQE
F6HV68________________SMYSSWGSGAYLFKPTGDAQPIIKSGGQMVISEGPLMQEVFSYPKTTVEKTPISHSTRIYNGEKNSIQE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain