SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene31142

Length: 303 nt

UniGene Fasta

>uagpf_v2_unigene31142
CGTCGTGACCTTGGCTGTCACTCATTTGTTCTGTGCAGAGCCAGCAAACCCAAAGAAGCCTTGTTTCCCGATCCCCACTGGACACAATCTCTGTGTCAAGCCATTCTCTGTGTCATGGCAGGCGAGAAAAAGCAGCCATTGCAGCCGAGCAATAGCGCGAACATTCCACAAGCCAACGGCAATGGCGTCAAGGGCAAAACCATCGAAGAAACATACCAGAAGAAGACTCAGCTGGAGCACATCCTGCTTCGTCCCGACACCTATGTTGGCTCCGTTGAGAAGCATACCCAGTCCCTCTGGGTT

Ace file of the UniGene uagpf_v2_unigene31142

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene693	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	DNA topoisomerase 2 (Fragment) n=1 Tax=Vitis vinifera RepID=D7T341_VITVI	-	-	75%
FL-Next	sp=DNA topoisomerase 2; Pisum sativum (Garden pea).	-	-	72%
Blast2go	dna topoisomerase ii	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	2-alkenal reductase.	EC:1.3.1.74	-	0.0	84%
Blast2go	DNA topoisomerase (ATP-hydrolyzing).	EC:5.99.1.3	-	0.0	84%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	84%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	84%
Blast2go	chromosome segregation	GO:0007059	Biological Process	84%
Blast2go	DNA topological change	GO:0006265	Biological Process	84%
Blast2go	2-alkenal reductase [NAD(P)] activity	GO:0032440	Molecular Function	84%
Blast2go	ATP binding	GO:0005524	Molecular Function	84%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	84%
Blast2go	DNA topoisomerase (ATP-hydrolyzing) activity	GO:0003918	Molecular Function	84%
Blast2go	DNA-dependent ATPase activity	GO:0008094	Molecular Function	84%
Blast2go	DNA topoisomerase complex (ATP-hydrolyzing)	GO:0009330	Cellular Component	84%
Blast2go	chromosome	GO:0005694	Cellular Component	84%
Blast2go	nucleus	GO:0005634	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Sma3	DNA topoisomerase, type IIA	IPR001241	-	-
Sma3	DNA topoisomerase, type IIA, subunit A/C-terminal	IPR002205	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	DNA topoisomerase, type IIA, subunit B, domain 2	IPR013506	-	-
Sma3	DNA topoisomerase, type IIA, subunit A, alpha-helical	IPR013757	-	-
Sma3	DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta	IPR013758	-	-
Sma3	DNA topoisomerase, type IIA, subunit B/N-terminal, alpha-beta	IPR013759	-	-
Sma3	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: O24308

Fln msg: Distance to subject end: 1410 aas, your sequence is shorter than subject: 63 - 1462

Fln protein: MAGEKKQPLQPSNSANIPQANGNGVKGKTIEETYQKKTQLEHILLRPDTYVGSVEKHTQSLWV

Protein Length: 64

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTGTTCTGTGCAGAGCCAGCAAACCCAAAGAAGCCTTGTTTCCCGATCCCCACTGGACACAATCTCTGTGTCAAGCCATTCTCTGTGTC_-_ATGGCAGGCGAGAAAAAGCAGCCATTGCAGCCGAGCAATAGCGCGAACATTCCACAAGCCAACGGCAATGGCGTCAAGGGCAAAACCATCGAAGAAACATACCAGAAGAAGACTCAGCTGGAGCACATCCTGCTTCGTCCCGACACCTATGTTGGCTCCGTTGAGAAGCATACCCAGTCCCTCTGGGTT

Fln Alignment:

uagpf_mira_c14134___KKQPLQPSNSANIPQANGNGVKGKTIEETYQKKTQLEHILLRPDTYVGSVEKHTQSLWV
O24308________________EKRPLQTSNAANIPS--------KTIEEMYQKKTQLEHILLRPDTYVGSIEKHTQNLWV

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
131	66		33		0.997454
165		33		66	0.997454
167	33	66			0.997454
194	33		66		0.997455

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain