SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene31022

Length: 510 nt

UniGene Fasta

>uagpf_v2_unigene31022
CGTCGTGACCTTGGCTGTCACTCATGTCTCTGGTCTTCCAGGTGCCTATCCTGTTCCGACTGATGCAGCTGCAAGAGCAGCTGCCCTAGCCGCTGCTCTTAATCTACAGCATAATCTAGCAAAGATACAGAAAGATGCTTTGCCTGAACACTATGAAGCTGAATTGGAAATCAATGATTTCCCACAAAATGCAAGGTGGAAGGTTACTCACAAGGAGACCTTGGGACCTATTTCAGAATGGACAGGAGCTGCAGTTACCACGAGAGGTCAGTTTTATCCTCCTGGGAAAATTCCTGGACCAGGGGAACGCAAACTTTATTTATTCATTGAAGGCCCAACTGAATCATCAGTCAAGAAGGCTAAAGCTGAGGTGAAACGAGTCTTGGAAGATTATACATCGCAGTCCCTTTCTTTACCAGGTTCAGGTCAACCTGGGAGGTATTCTGTGCTATAAGTTTTGAAGGGAATGTTCTTTCCACGACCAAGCTCATTGCTATTGTCAGTGGTTAG

Ace file of the UniGene uagpf_v2_unigene31022

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3117	3/4
SustainPine v2.0	sp_v2.0_unigene33678	1/4

Source	Descriptions	Term	Type	Identity
AutoFact	Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9SW84_RICCO	-	-	68%
FL-Next	sp=DEAD-box ATP-dependent RNA helicase 42; Arabidopsis thaliana (Mouse-ear cress).	-	-	74%
Blast2go	dead-box atp-dependent rna helicase 42-like	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	76%
Blast2go	ATP binding	GO:0005524	Molecular Function	76%
Blast2go	ATP-dependent helicase activity	GO:0008026	Molecular Function	76%
Blast2go	transferase activity	GO:0016740	Molecular Function	76%

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Protein-tyrosine phosphatase-like, PTPLA	IPR007482	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-
Sma3		IPR014021	-	-
Sma3	Intermediate filament protein, conserved site	IPR018039	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q8H0U8

Fln msg: your sequence is shorter than subject: 151 - 1166

Fln protein: VVTLAVTHVSGLPGAYPVPTDAAARAAALAAALNLQHNLAKIQKDALPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAVTTRGQFYPPGKIPGPGERKLYLFIEGPTESSVKKAKAEVKRVLEDYTSQSLSLPGSGQPGRYSVL*

Protein Length: 152

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTCTCTGGTCTTCCAGGTGCCTATCCTGTTCCGACTGATGCAGCTGCAAGAGCAGCTGCCCTAGCCGCTGCTCTTAATCTACAGCATAATCTAGCAAAGATACAGAAAGATGCTTTGCCTGAACACTATGAAGCTGAATTGGAAATCAATGATTTCCCACAAAATGCAAGGTGGAAGGTTACTCACAAGGAGACCTTGGGACCTATTTCAGAATGGACAGGAGCTGCAGTTACCACGAGAGGTCAGTTTTATCCTCCTGGGAAAATTCCTGGACCAGGGGAACGCAAACTTTATTTATTCATTGAAGGCCCAACTGAATCATCAGTCAAGAAGGCTAAAGCTGAGGTGAAACGAGTCTTGGAAGATTATACATCGCAGTCCCTTTCTTTACCAGGTTCAGGTCAACCTGGGAGGTATTCTGTGCTATAA___GTTTTGAAGGGAATGTTCTTTCCACGACCAAGCTCATTGCTATTGTCAGTGGTTAG

Fln Alignment:

uagpf_mira_c13896___VSGLPGAYPV-----PTDXXXXXXXXXXXXXXXXXXXKIQKDALPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAVTTRGQFYPPGKIPGPGERKLYLFIEGPTESSVKKAKAEVKRVLEDYTSQSLSLPGSGQPGRYSVL
Q8H0U8________________LAAMPGVLPVTVPTLPSEGAGRAAAMVAAMNLQHNLAKIQADAMPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQFYPTGRIPGPGERKLYLFIEGPSEKSVKHAKAELKRVLEDITNQAMSSLPGGASGRYSVL

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
125	66		33		0.997476
127	66	33			0.997476
132	66	33			0.997476
133	66	33			0.997476
135	66			33	0.997476
140	33		33	33	0.997752
145	33			66	0.997459
146		33	66		0.997476
194	66	33			0.997476
226	66		33		0.997461
270			33	66	0.997476
273	33		66		0.997454
275	33			66	0.997471

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain