SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene31007

Length: 280 nt

UniGene Fasta

>uagpf_v2_unigene31007
TCCAAGGAACGGAAGTTGCTAAGGAAAGCTCAGATATCATTATTCTAGATGATAGTTTTTCCTCTGTTGTGAAGGTAGTTCGGTGGGGTCGTTCAGTTTATGCAAACATTCAGAAATTCATTCAGTTTCAACTTACTGTAAATGTTGCAGCACTTGCAATTAATTTTGTTTCTTCTGTTTCATCTGGAGATGTTCCTCTAACTGCTGTTCAGCTTCTCTGGGTCAACCTTATCATGGATACTCTTGGAGCTCTTGCATTGGCACTGAACCCCCAATTCGC

Ace file of the UniGene uagpf_v2_unigene31007

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene63695	1/2
SustainPine v2.0	sp_v2.0_unigene77859	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	Autoinhibited calcium ATPase n=2 Tax=Populus trichocarpa RepID=B9HK60_POPTR	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	autoinhibited calcium atpase	-	-	66%

Source	ECs	Term	Type	e value	Identity
Blast2go	Calcium-transporting ATPase.	EC:3.6.3.8	-	0.0	66%

Source	GOs	Term	Type	Identity
Blast2go	inflorescence morphogenesis	GO:0048281	Biological Process	66%
Blast2go	shoot development	GO:0048367	Biological Process	66%
Blast2go	response to nematode	GO:0009624	Biological Process	66%
Blast2go	calcium-transporting ATPase activity	GO:0005388	Molecular Function	66%
Blast2go	protein self-association	GO:0043621	Molecular Function	66%
Blast2go	plasma membrane	GO:0005886	Cellular Component	66%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	ATPase, P-type, H+ transporting proton pump	IPR000695	-	-
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3	ATPase, P-type cation-transporter, N-terminal	IPR004014	-	-
Sma3	ATPase, P-type cation exchange, alpha subunit, eukaryotic	IPR005775	-	-
Sma3	ATPase, P-type, calcium-transporting	IPR005782	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	ATPase, P-type cation-transporter, C-terminal	IPR006068	-	-
Sma3	ATPase, P-type cation exchange, alpha subunit	IPR006069	-	-
Sma3	ATPase, P-type, calcium-transporting, PMCA-type	IPR006408	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AEG4

Fln msg: Distance to subject end: 193 aas, your sequence is shorter than subject: 92 - 387

Fln protein: QGTEVAKESSDIIILDDSFSSVVKVVRWGRSVYANIQKFIQFQLTVNVAALAINFVSSVSSGDVPLTAVQLLWVNLIMDTLGALALALNPQF

Protein Length: 93

Fln nts: TCCAAGGAACGGAAGTTGCTAAGGAAAGCTCAGATATCATTATTCTAGATGATAGTTTTTCCTCTGTTGTGAAGGTAGTTCGGTGGGGTCGTTCAGTTTATGCAAACATTCAGAAATTCATTCAGTTTCAACTTACTGTAAATGTTGCAGCACTTGCAATTAATTTTGTTTCTTCTGTTTCATCTGGAGATGTTCCTCTAACTGCTGTTCAGCTTCTCTGGGTCAACCTTATCATGGATACTCTTGGAGCTCTTGCATTGGCACTGAACCCCCAATTCGC

Fln Alignment:

uagpf_mira_c13853___QGTEVAKEXXXXXXXXXXXXXVVKVVRWGRSVYANIQKFIQFQLTVNVAALAINFVSSVSSGDVPLTAVQLLWVNLIMDTLGALALA
D5AEG4________________QGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALSINFVAAVSSGDVPLTAVQLLWVNLIMDTLGALALA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain