SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene30991

Length: 234 nt

UniGene Fasta

>uagpf_v2_unigene30991
ATTCCTAATTAATGGGTTTATAACCAGGTGCTGCTATTTTCGACATGGAATATTCACGGTGGCTAGAGGAACAACATGGCCGAATGTGTGAGCTGAGGGCAGCATTCCAGTCCCACATACCGGACAACGATCTACGCCTGCTGCTAGACAACTGCCAGCGCCACTATGACGAAATATTCCGGTTGAAGAGCATTGCAGCCAAGACAGATGTGTTCCACCTGGTTTCAGGGATGT

Ace file of the UniGene uagpf_v2_unigene30991

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7670	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	Transcription factor HBP-1b(C1), putative n=1 Tax=Ricinus communis RepID=B9T2C4_RICCO	-	-	66%
FL-Next	sp=Transcription factor TGA2; Arabidopsis thaliana (Mouse-ear cress).	-	-	56%
Blast2go	transcription factor hbp-1b -like	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	82%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	82%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	82%
Blast2go	protein dimerization activity	GO:0046983	Molecular Function	82%
Blast2go	nucleus	GO:0005634	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	Basic-leucine zipper domain	IPR004827	-	-
Sma3	bZIP transcription factor, bZIP-1	IPR011616	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	DNA/RNA non-specific endonuclease, active site	IPR018524	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P43273

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 152 aas, your sequence is shorter than subject: 77 - 330

Fln protein: S*LMGL*PGAAIFDMEYSRWLEEQHGRMCELRAAFQSHIPDNDLRLLLDNCQRHYDEIFRLKSIAAKTDVFHLVSGM

Protein Length: 78

Fln nts: ATTCCTAATTAATGGGTTTATAACCAGGTGCTGCTATTTTCGACATGGAATATTCACGGTGGCTAGAGGAACAACATGGCCGAATGTGTGAGCTGAGGGCAGCATTCCAGTCCCACATACCGGACAACGATCTACGCCTGCTGCTAGACAACTGCCAGCGCCACTATGACGAAATATTCCGGTTGAAGAGCATTGCAGCCAAGACAGATGTGTTCCACCTGGTTTCAGGGATGT

Fln Alignment:

uagpf_mira_c13810___GAAIFDMEYSRWLEEQHGRMCELRAAFQSHIPDNDLRLLLDNCQRHYDEIFRLKSIAAKTDVFHLVSGM
P43273________________GALAFDAEHSRWLEEKNKQMNELRSALNAHAGDSELRIIVDGVMAHYEELFRIKSNAAKNDVFHLLSGM

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain