SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene30929

Length: 239 nt

UniGene Fasta

>uagpf_v2_unigene30929
CGTCGTGACCTTGGCTGTCACTCAGGTTTGTGCTGTCGTGTGCTGGCTGTGAGTGAAATTATCAAGGAGATTGTGAAACCGCCGCTTCTGTCCGGAGTGCTCACATTTCCTGTGTCCTTGAAGCAGCCTGGACCGAAAGATTCTGCTGTGCAATGTTTTATCAAGCAAGATAGGACTGCATCTGCATATTATTTGTACTTGGGTTTGGCTTCAACGATTTGATGTAAAACTGACTGGTA

Ace file of the UniGene uagpf_v2_unigene30929

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8944	2/4
SustainPine v2.0	sp_v2.0_unigene69910	1/4

Source	Descriptions	Term	Type	Identity
AutoFact	Tubby-like protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SPK2_PHYPA	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	tubby-like f-box protein 3	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on ester bonds, Phosphoric diester hydrolases.	EC:3.1.4.-	-	0.0	75%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Ether lipid metabolism	00565		0.0	75%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	75%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	75%
Blast2go	phosphoric diester hydrolase activity	GO:0008081	Molecular Function	75%

Source	InterPros	Term	Type	Identity
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Tubby, C-terminal	IPR000007	-	-
Sma3	Tubby, C-terminal, conserved site	IPR018066	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LK95

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 255 aas, your sequence is shorter than subject: 74 - 418

Fln protein: RRDLGCHSGLCCRVLAVSEIIKEIVKPPLLSGVLTFPVSLKQPGPKDSAVQCFIKQDRTASAYYLYLGLASTI*

Protein Length: 75

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTTTGTGCTGTCGTGTGCTGGCTGTGAGTGAAATTATCAAGGAGATTGTGAAACCGCCGCTTCTGTCCGGAGTGCTCACATTTCCTGTGTCCTTGAAGCAGCCTGGACCGAAAGATTCTGCTGTGCAATGTTTTATCAAGCAAGATAGGACTGCATCTGCATATTATTTGTACTTGGGTTTGGCTTCAACGATTTGATGTAAAACTGACTGGTA

Fln Alignment:

uagpf_mira_c13682___EIIKEIVKPPLLSGVLTFPVSLKQPGPKDSAVQCFIKQDRTASAYYLYLGLASTI
B8LK95________________EIIKEIVKPPLLSGVLTFPVSLKQPGPKDLPVQCFIKQDRTASAYYLYLGLTSTI

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
34		50		50	1.0
36			50	50	1.0
41	50			50	1.0
42		50	50		1.0
45	50			50	1.0
47	50		50		1.0
48	50	50			1.0
49		50		50	1.0
53		50	50		1.0
55		50	50		1.0
56			50	50	1.0
57		50	50		1.0
219		66		33	0.997454
221	66			33	0.997464

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain