SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene30905

Length: 403 nt

UniGene Fasta

>uagpf_v2_unigene30905
CGTCGTGACCTTGGCTGTCACTCAGCCTTAACCCACAGCCAAATTTGATGTCTTGCCCTTGGTTGTCAGTGGTTTCAATGCCACCAGCGTATCATGCACAGATTGCAACTGGCAAAAGCAAAGTGGAGAAGAACCCAATTTCAGAGCTACCAATGAAGATGCTTATACAGCACTAGTTTCTTTGAAAGGAGAGCAGAATGAACTGGCAACATGTGGATCCTTAGAACAAGATGCTTTTTCTGCAATTCTATGTCAGCTCTATTCCACCATTCCCGGTGGAGGAGAAGCTGACAAAGCTGCAGCCATGAGTGCAGTAAACACTTCTGCTTATTCATCCTACAATTACGACTGTGATTCGACAATGGATTTGCTGGTGTGTGGAATATGAGTCAGTAATTTGAAT

Ace file of the UniGene uagpf_v2_unigene30905

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27415	1/2
SustainPine v2.0	sp_v2.0_unigene71256	1/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	R2r3-myb transcription factor, putative n=1 Tax=Ricinus communis RepID=B9SYQ1_RICCO	-	-	1.0e-13	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Blast2go	myb family transcription expressed	-	-	0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	response to jasmonic acid stimulus	GO:0009753	Biological Process	82%
Blast2go	response to gibberellin stimulus	GO:0009739	Biological Process	82%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	82%
Blast2go	response to chitin	GO:0010200	Biological Process	82%
Blast2go	response to salicylic acid stimulus	GO:0009751	Biological Process	82%
Blast2go	response to ethylene stimulus	GO:0009723	Biological Process	82%
Blast2go	nucleus	GO:0005634	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	Myb transcription factor	IPR015495	-	-
Sma3	Myb-like domain	IPR017877	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLD7

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 129 - 295

Fln protein: VVTLAVTQP*PTAKFDVLPLVVSGFNATSVSCTDCNWQKQSGEEPNFRATNEDAYTALVSLKGEQNELATCGSLEQDAFSAILCQLYSTIPGGGEADKAAAMSAVNTSAYSSYNYDCDSTMDLLVCGI*

Protein Length: 130

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCCTTAACCCACAGCCAAATTTGATGTCTTGCCCTTGGTTGTCAGTGGTTTCAATGCCACCAGCGTATCATGCACAGATTGCAACTGGCAAAAGCAAAGTGGAGAAGAACCCAATTTCAGAGCTACCAATGAAGATGCTTATACAGCACTAGTTTCTTTGAAAGGAGAGCAGAATGAACTGGCAACATGTGGATCCTTAGAACAAGATGCTTTTTCTGCAATTCTATGTCAGCTCTATTCCACCATTCCCGGTGGAGGAGAAGCTGACAAAGCTGCAGCCATGAGTGCAGTAAACACTTCTGCTTATTCATCCTACAATTACGACTGTGATTCGACAATGGATTTGCTGGTGTGTGGAATATGA___GTCAGTAATTTGAAT

Fln Alignment:

uagpf_mira_c13634___SGFNATSVSCTDCNWQKQSGEEPNFRATNEDAYTALVSLKGEQNELATCGSLEQDAFSAILCQLYSTIPGGGEADK-AAAMSAVNTSAYSSYNYDCDSTMDL
B8LLD7________________SVFNATNLSCTDCSWQKQSGEEAVFRGTSADAHTALVSLKEEQNELASCGSLEQDALSAILCQLYSAIPGGVGADKAAAAMSAVNASAYSSYNYDCDSTLDL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain