SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene30903

Length: 477 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene30903
CGTCGTGACCTTGGCTGTCACTCAGGTATCTACAATTCTGGGAGTTGGTACAGGACTCAAGAACAACGATGTTCTCTTTTCGGGATATCCGGTAATTGGATATCAGAATAACATTCAAGCTGCTGGATCGTGTCTGAGCAGCCCAGAGGACGAACTGCGGACAGCGTGCGCATGGGATCCTCGGGTCAAAGGATTATTCTTATTTCAGAATGGACTCAGTATCAGCGTGTCCAACATCGGACAATTCCTTTCCGACGTAAAGAACCTCCGGTACACCATTCCGAGCAGCCTGTGTGGGGTTGAGCTCTACTCTGGTTTTCTAATGCGTTATGTAAAAGCTTCGAGTGCTTATTTGGGAAAAGAAGAGGACTCAGTAGAGATCGAAATGACGTACTATCGGGCCAAGGATCCCAACAGTCCCAGACTGTATGAAGATGTGTTGGAGGAATTGAGCAAATGGCGCTCGTGAAATATGGA

Ace file of the UniGene uagpf_v2_unigene30903 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene31782	7/8

Source	Descriptions	Term	Type	e value	Identity
AutoFact	d-lactate dehydrogenase, putative (EC:1.1.3.8)	-	-	7.00005e-41	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Blast2go	fad-binding domain-containing protein	-	-	0.0	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell wall	GO:0005618	Cellular Component	0.0	74%

Source	InterPros	Term	Type	Identity
Sma3	FAD linked oxidase, N-terminal	IPR006094	-	-
Sma3	D-arabinono-1,4-lactone oxidase	IPR007173	-	-
Sma3	Plant-specific FAD-dependent oxidoreductase	IPR010030	-	-
Sma3	Protein-tyrosine phosphatase, active site	IPR016130	-	-
Sma3	FAD-binding, type 2	IPR016166	-	-
Sma3	FAD-linked oxidase, FAD-binding, subdomain 2	IPR016168	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NW10

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 101 aas, your sequence is shorter than subject: 156 - 500

Fln protein: VVTLAVTQVSTILGVGTGLKNNDVLFSGYPVIGYQNNIQAAGSCLSSPEDELRTACAWDPRVKGLFLFQNGLSISVSNIGQFLSDVKNLRYTIPSSLCGVELYSGFLMRYVKASSAYLGKEEDSVEIEMTYYRAKDPNSPRLYEDVLEELSKWRS*

Protein Length: 157

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTATCTACAATTCTGGGAGTTGGTACAGGACTCAAGAACAACGATGTTCTCTTTTCGGGATATCCGGTAATTGGATATCAGAATAACATTCAAGCTGCTGGATCGTGTCTGAGCAGCCCAGAGGACGAACTGCGGACAGCGTGCGCATGGGATCCTCGGGTCAAAGGATTATTCTTATTTCAGAATGGACTCAGTATCAGCGTGTCCAACATCGGACAATTCCTTTCCGACGTAAAGAACCTCCGGTACACCATTCCGAGCAGCCTGTGTGGGGTTGAGCTCTACTCTGGTTTTCTAATGCGTTATGTAAAAGCTTCGAGTGCTTATTTGGGAAAAGAAGAGGACTCAGTAGAGATCGAAATGACGTACTATCGGGCCAAGGATCCCAACAGTCCCAGACTGTATGAAGATGTGTTGGAGGAATTGAGCAAATGGCGCTCGTGAAATATGGA

Fln Alignment:

uagpf_mira_c13629___AVTQVSTILGVGTGLKNNDVLFSGYPVIGYQNNIQAAGSCLSSPEDELRTACAWDPRVKGLFLFQNGLSISVSNIGQFLSDVKNLRYTIPSSLCGVELYSGFLMRYVKASSAYLGKEEDSVEIEMTYYRAKDPNSPRLYEDVLEELSK
A9NW10________________SMAQVSIILTSGTGLQNNDVLYLGYPVIGYQNNMQAAGSCLSSPEDELRTACPWDPRIKGLFFFQSGLSISLSKIGQFLSDVRKLRDTIPSSLCGVELYNGFLMRYVKASSAYLGKQEDSVDIEITYYRAKDPSSPRLYEDVLEEIEQ

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
101		80	20		0.995493
176		80		20	0.995493
208	80	20			0.995493
245	20		80		0.995493
270		20		80	0.995493
278	20			80	0.995493
300			80	20	0.995493
319	20		80		0.995493
321		80		20	0.995493
322	20	80			0.995493
338		20	80		0.995493
339	20		80		0.995493
355	16			83	0.994512
368	83	16			0.994512
374	83			16	0.994512
375			16	83	0.994512
376	16			83	0.994512
377		83	16		0.994512
381		16		83	0.994512
383			16	83	0.994512
388			14	85	0.993534
389			14	85	0.993534
390	85			14	0.993534
392	14	85			0.993534
393		14	85		0.993534
396		14		85	0.993534
397	85		14		0.993534
439	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain