SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene30877

Length: 308 nt

UniGene Fasta

>uagpf_v2_unigene30877
CGTCGTGACCTTGGCTGTCACTCAGATTTGGCAGCACACGTCGTGACCTTGGCTGTCACTCATTCAAGTTCAGGAATTCAAAATGCATCTCTAAGCAATGGCTGTCATGCCTTGTTAAACCCGCCTAATGTTTCTGAAAGGGGTGGCGGTGAGACATGGTATGAAGTTGGACGTTCAAAAACATATACACCAACAGCTGATGATGTGGGCTATGCTCTGAAGCTGGAATGTGTGGCAGTTGATGCAGCCACGGGAATACCAGTAGGTCCAGCCAGCACACTCCACACTTCCCGAGTTATCCCAGCCCC

Ace file of the UniGene uagpf_v2_unigene30877

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3181	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	carbon catabolite repressor protein 4-like 2 [Arabidopsis thaliana] sp\|Q9M2F8.2\|CCR4B_ARATH RecName: Full=Carbon catabolite repressor protein 4 homolog 2; Short=CCR4 homolog 2 gb\|AEE79801.1\| carbon catabolite repressor protein 4-like 2 [Arabidopsis thalia	-	-	64%
FL-Next	sp=Carbon catabolite repressor protein 4 homolog 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	51%
Blast2go	endonuclease exonuclease phosphatase family expressed	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Poly(A)-specific ribonuclease.	EC:3.1.13.4	-	0.0	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	endonuclease activity	GO:0004519	Molecular Function	0.0	84%
Blast2go	poly(A)-specific ribonuclease activity	GO:0004535	Molecular Function	0.0	84%

Source	InterPros	Term	Type	e value	Identity
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9M2F8

Fln msg: Distance to subject end: 383 aas, your sequence is shorter than subject: 102 - 603

Fln protein: RRDLGCHSDLAAHVVTLAVTHSSSGIQNASLSNGCHALLNPPNVSERGGGETWYEVGRSKTYTPTADDVGYALKLECVAVDAATGIPVGPASTLHTSRVIPA

Protein Length: 103

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGATTTGGCAGCACACGTCGTGACCTTGGCTGTCACTCATTCAAGTTCAGGAATTCAAAATGCATCTCTAAGCAATGGCTGTCATGCCTTGTTAAACCCGCCTAATGTTTCTGAAAGGGGTGGCGGTGAGACATGGTATGAAGTTGGACGTTCAAAAACATATACACCAACAGCTGATGATGTGGGCTATGCTCTGAAGCTGGAATGTGTGGCAGTTGATGCAGCCACGGGAATACCAGTAGGTCCAGCCAGCACACTCCACACTTCCCGAGTTATCCCAGCCCC

Fln Alignment:

uagpf_mira_c13584___SSGIQNASLSNGCHALLNPPNVSERGGGETWYEVGRSKTYTPTADDVGYALKLECVAVDAATGIPVGPASTLHTSRVIPA
Q9M2F8________________SGSMSNLSIANNGPAPFYPSNITQKNGGETLVEVGGCKTYTPTADDISHVLKFECVVANAETKQIVGHPSTILTSRVIPA

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
46	66			33	0.997471
47		66	33		0.997471
48		66	33		0.997471

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain