SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene30779

Length: 322 nt

UniGene Fasta

>uagpf_v2_unigene30779
CAGATTGTTTTCCTAGTAAAAAAACGGCACCTAGAGCAAAGGATCCTGCTTGGGCATATGTTGAAATGATTGATAGTCATATGCATTGCAAATTTTACCATAGGAAAATTAAGGATGGTCAAGGGGGCATTCATAGGTTGAAACAACACCTCGCAGGGATTAGAGGCCAAATTACCCCATGTGGCTCTGATCAAATTGGGGAGATTAGAAAGAATTTGTTGGCCAGCTTTGAGAAATTTCAAGAAGATAAGGCTAGGCAAAAAGAGATACAGGATGAAATCAGCAGGAAGAGGGAGATACAAAAAATGATGGCTACCAACCC

Ace file of the UniGene uagpf_v2_unigene30779

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13505	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	DUF659 multi-domain protein	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	50%
Blast2go	uncharacterized protein loc100247282	-	-	59%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	59%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, FYVE-type	IPR000306	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Pumilio RNA-binding repeat	IPR001313	-	-
Sma3	Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1	IPR001578	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Zinc finger, BED-type predicted	IPR003656	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	HAT dimerisation	IPR008906	-	-
Sma3	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II	IPR009091	-	-
Sma3	Histidine triad motif	IPR011151	-	-
Sma3		IPR011523	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Pleckstrin homology-like domain	IPR011993	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Brevis radix-like domain	IPR013591	-	-
Sma3		IPR015706	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	Zinc finger, FYVE-related	IPR017455	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5BED6

Fln msg: Distance to subject end: 726 aas, your sequence is shorter than subject: 106 - 896

Fln protein: DCFPSKKTAPRAKDPAWAYVEMIDSHMHCKFYHRKIKDGQGGIHRLKQHLAGIRGQITPCGSDQIGEIRKNLLASFEKFQEDKARQKEIQDEISRKREIQKMMATN

Protein Length: 107

Fln nts: CAGATTGTTTTCCTAGTAAAAAAACGGCACCTAGAGCAAAGGATCCTGCTTGGGCATATGTTGAAATGATTGATAGTCATATGCATTGCAAATTTTACCATAGGAAAATTAAGGATGGTCAAGGGGGCATTCATAGGTTGAAACAACACCTCGCAGGGATTAGAGGCCAAATTACCCCATGTGGCTCTGATCAAATTGGGGAGATTAGAAAGAATTTGTTGGCCAGCTTTGAGAAATTTCAAGAAGATAAGGCTAGGCAAAAAGAGATACAGGATGAAATCAGCAGGAAGAGGGAGATACAAAAAATGATGGCTACCAACCC

Fln Alignment:

uagpf_mira_c13378___PRAKDPAWAYVEMIDS---HMHCKFYHRKIKDGQGGIHRLKQHLAGIRGQITPC
A5BED6________________PRATDPGWAHGIMVNGGRQKIKCKYCHKVILGG--GISRLKQHLAGERGNVAPC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain