SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene30743

Length: 229 nt

UniGene Fasta

>uagpf_v2_unigene30743
TCTTCTTGGATGGTGGCTCTGCGAACGACAAGTGAAATCTGGAGGTCTTAATGGGCGGCCTGAGAAGCTTGCTGATGTGTGCTATTCATGGTGGGTTTTATCCAGTTTGACTATCATTGAACGAGCGCATTGGATAGACAGGGAGAAACTTAAGACCTTCATCCTTGATTGTCAGGACAAGGAGCATGGAGGTATCTCAGATAGGCCAGATGATGCTGTTGATGTTCGC

Ace file of the UniGene uagpf_v2_unigene30743

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2777	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	putative Rab geranylgeranyl transferase type II beta subunit [Glycine max]	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	rab beta subunit	-	-	88%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:2.5.1.6-	-	0.0	88%

Source	GOs	Term	Type	Identity
Blast2go	L-methionine salvage from methylthioadenosine	GO:0019509	Biological Process	88%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	88%
Blast2go	Rab geranylgeranyltransferase activity	GO:0004663	Molecular Function	88%
Blast2go	metal ion binding	GO:0046872	Molecular Function	88%
Blast2go	dioxygenase activity	GO:0051213	Molecular Function	88%

Source	InterPros	Term	Type	Identity
Sma3	Prenyltransferase/squalene oxidase	IPR001330	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Transposase, MuDR, plant	IPR004332	-	-
Sma3	Exportin-1/Importin-beta-like	IPR013598	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVH2

Fln msg: Distance to subject end: 44 aas, your sequence is shorter than subject: 76 - 318

Fln protein: LLGWWLCERQVKSGGLNGRPEKLADVCYSWWVLSSLTIIERAHWIDREKLKTFILDCQDKEHGGISDRPDDAVDVR

Protein Length: 77

Fln nts: TCTTCTTGGATGGTGGCTCTGCGAACGACAAGTGAAATCTGGAGGTCTTAATGGGCGGCCTGAGAAGCTTGCTGATGTGTGCTATTCATGGTGGGTTTTATCCAGTTTGACTATCATTGAACGAGCGCATTGGATAGACAGGGAGAAACTTAAGACCTTCATCCTTGATTGTCAGGACAAGGAGCATGGAGGTATCTCAGATAGGCCAGATGATGCTGTTGATGTTCGC

Fln Alignment:

uagpf_mira_c13297___LLGWWLCERQVKSGGLNGRPEKLADVCYSWWVLSSLTIIERAHWIDREKLKTFILDCQDKEHGGISDRPDDAVDV
A9NVH2________________LLGWWLCERQVKSGGLNGRPEKLADVCYSWWVLSSLTIIDRVHWIDKEKLKTFILDCQDKEHGGISDRPDDAVDV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain