SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene30738

Length: 231 nt

UniGene Fasta

>uagpf_v2_unigene30738
CGTCGTGACCTTGGCTGTCACGTCGTGACCTTGGCTGTCACTCATTTCATATCTGTTGATCTTCGTACGATGGCAAATGCATTCATGACAAATGTGGCTGGGCTTGAAAAGGAGCTTGAAGCTTTGATTATGGATAATCAAATTCAGGCACGCATCGATTCACATAACAAGATCTTATATGCTCGCCATGCTGATCAACGTAATACAACATTTCAGCGGGTTCTCCAGACT

Ace file of the UniGene uagpf_v2_unigene30738

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3813	3/4

Source	Descriptions	Term	Type	Identity
AutoFact	COP9 signalosome complex subunit 1 [Arabidopsis thaliana] sp\|P45432.2\|CSN1_ARATH RecName: Full=COP9 signalosome complex subunit 1; Short=CSN complex subunit 1; AltName: Full=Constitutive photomorphogenesis protein 11; AltName: Full=Protein FUSCA 6 gb\|AAK2	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	fusca protein fus6	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	protein complex assembly	GO:0006461	Biological Process	87%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	87%
Blast2go	response to absence of light	GO:0009646	Biological Process	87%
Blast2go	hyperosmotic response	GO:0006972	Biological Process	87%
Blast2go	photomorphogenesis	GO:0009640	Biological Process	87%
Blast2go	response to salt stress	GO:0009651	Biological Process	87%
Blast2go	cullin deneddylation	GO:0010388	Biological Process	87%
Blast2go	protein binding	GO:0005515	Molecular Function	87%
Blast2go	signalosome	GO:0008180	Cellular Component	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	Proteasome component (PCI) domain	IPR000717	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AC30

Fln msg: Distance to subject end: 30 aas, your sequence is shorter than subject: 77 - 433

Fln protein: RRDLGCHVVTLAVTHFISVDLRTMANAFMTNVAGLEKELEALIMDNQIQARIDSHNKILYARHADQRNTTFQRVLQT

Protein Length: 78

Fln nts: CGTCGTGACCTTGGCTGTCACGTCGTGACCTTGGCTGTCACTCATTTCATATCTGTTGATCTTCGTACGATGGCAAATGCATTCATGACAAATGTGGCTGGGCTTGAAAAGGAGCTTGAAGCTTTGATTATGGATAATCAAATTCAGGCACGCATCGATTCACATAACAAGATCTTATATGCTCGCCATGCTGATCAACGTAATACAACATTTCAGCGGGTTCTCCAGACT

Fln Alignment:

uagpf_mira_c13287___THFISVDLRTMANAFMTNVAGLEKELEALIMDNQIQARIDSHNKILYARHADQRNTTFQRVLQT
D5AC30________________TPFISVDLHTMANAFMTNVAGLEKELEALIMDNQIQARIDSHNKILYARHADQRNTTFQRVLQT

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
34		25	75		0.996476
35			66	33	0.997452
36	25	50		25	0.995544
37		25		75	0.996476
38	33		66		0.997452
39		33		66	0.997452
40	25	50	25		0.995544
45	50	25			0.995533
48			33	66	0.997452
49		66	33		0.997452
50	66	33			0.997452
52	66		33		0.997452
55	33			66	0.997452
56		33	66		0.997452
58		33		66	0.997452
59	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain