SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene30715

Length: 571 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene30715
CGTCGTGACCTTGGCTGTCACTCATTGGTGGGGGAAATGGAATTCTATGGCACAACAGTGTTGAACAGTATAACCCAAACAGTGGATTATGGACAACATGTCCTTCAATGGGTTTTCAAAGAGGCAGCTTAGCAGGAGCTTGTCTAGATAACAAAATTTTTGCAATGGGAGGTGGCAATGGGGCAGAATATTTTTCTGAAGTGGAGATGTATGATCCATATCTTGGCAAATGGTTACCCTATGGAACCATGCTTCAAAAACGCTTTGCTTTAGCAGGAACGGTTCTGGGTGGAGCGTTATATGCTCTGGGTGGTTTTGATGGCAAGCAATACTTGAAGTCAGTTGAAAGATTTGATCCACGTGAGGCTCAATGGATCCAACTTGAAGAAATGAGTGCCAAGAGAGGAAGCTTGTCGGCTGCAGTATTAAATGAAAAGCTCTATGCAATCGGGGGTTTTGACGGCTCAAAACTTTTGTCTAGTGTGGAAGTTTTTGATCCTCGTGCAGGTTCCTGGCTCATGAAGTTCAGATTACAGGGGATTCGCAGTGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene uagpf_v2_unigene30715 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene837	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	Kelch-like protein [Oryza sativa Japonica Group]	-	-	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	25%
Blast2go	uncharacterized protein	-	-	61%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Kelch repeat type 1	IPR006652	-	-
Sma3		IPR013089	-	-
Sma3	Development/cell death domain	IPR013989	-	-
Sma3	Kelch-type beta propeller	IPR015915	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NX50

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 50 aas, your sequence is shorter than subject: 184 - 386

Fln protein: S*PWLSLIGGGNGILWHNSVEQYNPNSGLWTTCPSMGFQRGSLAGACLDNKIFAMGGGNGAEYFSEVEMYDPYLGKWLPYGTMLQKRFALAGTVLGGALYALGGFDGKQYLKSVERFDPREAQWIQLEEMSAKRGSLSAAVLNEKLYAIGGFDGSKLLSSVEVFDPRAGSWLMKFRLQGIRSE*

Protein Length: 185

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTGGTGGGGGAAATGGAATTCTATGGCACAACAGTGTTGAACAGTATAACCCAAACAGTGGATTATGGACAACATGTCCTTCAATGGGTTTTCAAAGAGGCAGCTTAGCAGGAGCTTGTCTAGATAACAAAATTTTTGCAATGGGAGGTGGCAATGGGGCAGAATATTTTTCTGAAGTGGAGATGTATGATCCATATCTTGGCAAATGGTTACCCTATGGAACCATGCTTCAAAAACGCTTTGCTTTAGCAGGAACGGTTCTGGGTGGAGCGTTATATGCTCTGGGTGGTTTTGATGGCAAGCAATACTTGAAGTCAGTTGAAAGATTTGATCCACGTGAGGCTCAATGGATCCAACTTGAAGAAATGAGTGCCAAGAGAGGAAGCTTGTCGGCTGCAGTATTAAATGAAAAGCTCTATGCAATCGGGGGTTTTGACGGCTCAAAACTTTTGTCTAGTGTGGAAGTTTTTGATCCTCGTGCAGGTTCCTGGCTCATGAAGTTCAGATTACAGGGGATTCGCAGTGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

uagpf_mira_c13233___SVEQYNPNSGLWTTCPSMGFQRGSLAGACLDNKIFAMGG-GNGAEYFSEVEMYDPYLGKWLPYGTMLQKRFALAGTVLGGALYALGGFDGKQ--YLKSVERFDPREAQWIQLEEMSAKRGSLSAAVLNEKLYAIGGFDGSKLLSSVEVFDPRAGSW
A9NX50________________NVYMYDSALNRWSELPNMKVARYGFACAEVNGLVYAVGGHGERDENLSSVEVFDPKTNEWTMVESLRRPRWGCFACGLEGRLYVMGGRSSFTIGHSRCIDVYDPEIHTWAEMKNGCVM--AVAHAVLDKKLFCMEWKNERKL----AVFNVVDNSW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain